Analysis of interatomic Contacts of Structural Units in PDB entry:
8K3H


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K3H entry

There are 4 chains in PDB entry 8K3H (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 332SER 628
A
 ASN 630GLY 811
B
 PRO 332SER 628
B
 ASN 630GLY 811
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8K3H. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
337 347Right-handed alpha
Helix 2
AA2
A
352 368Right-handed alpha
Helix 3
AA3
A
374 384Right-handed alpha
Helix 4
AA4
A
391 397Right-handed alpha
Helix 5
AA5
A
398 415Right-handed alpha
Helix 6
AA6
A
442 455Right-handed alpha
Helix 7
AA7
A
466 480Right-handed alpha
Helix 8
AA8
A
487 489Right-handed 310
Helix 9
AA9
A
496 509Right-handed alpha
Helix 10
AB1
A
525 536Right-handed alpha
Helix 11
AB2
A
552 559Right-handed alpha
Helix 12
AB3
A
580 590Right-handed alpha
Helix 13
AB4
A
613 618Right-handed 310
Helix 14
AB5
A
633 637Right-handed 310
Helix 15
AB6
A
644 659Right-handed alpha
Helix 16
AB7
A
663 665Right-handed 310
Helix 17
AB8
A
666 682Right-handed alpha
Helix 18
AB9
A
688 693Right-handed alpha
Helix 19
AC1
A
694 695Right-handed 310
Helix 20
AC2
A
696 700Right-handed 310
Helix 21
AC3
A
702 738Right-handed alpha
Helix 22
AC4
A
760 772Right-handed alpha
Helix 23
AC5
A
780 783Right-handed 310
Helix 24
AC6
A
797 811Right-handed alpha
Helix 25
AC7
B
337 347Right-handed alpha
Helix 26
AC8
B
352 368Right-handed alpha
Helix 27
AC9
B
374 384Right-handed alpha
Helix 28
AD1
B
391 397Right-handed alpha
Helix 29
AD2
B
398 415Right-handed alpha
Helix 30
AD3
B
442 455Right-handed alpha
Helix 31
AD4
B
466 480Right-handed alpha
Helix 32
AD5
B
487 489Right-handed 310
Helix 33
AD6
B
496 509Right-handed alpha
Helix 34
AD7
B
525 536Right-handed alpha
Helix 35
AD8
B
552 559Right-handed alpha
Helix 36
AD9
B
580 590Right-handed alpha
Helix 37
AE1
B
613 618Right-handed 310
Helix 38
AE2
B
633 637Right-handed 310
Helix 39
AE3
B
644 659Right-handed alpha
Helix 40
AE4
B
666 682Right-handed alpha
Helix 41
AE5
B
688 693Right-handed alpha
Helix 42
AE6
B
694 695Right-handed 310
Helix 43
AE7
B
696 700Right-handed 310
Helix 44
AE8
B
702 738Right-handed alpha
Helix 45
AE9
B
760 772Right-handed alpha
Helix 46
AF1
B
780 783Right-handed 310
Helix 47
AF2
B
797 811Right-handed alpha
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There are 8 sheets in PDB entry 8K3H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
427 428first strand
Strand 2
A
774 775parallel
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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
491 494first strand
Strand 2
A
639 642anti-parallel
Strand 3
A
621 626anti-parallel
Strand 4
A
596 600parallel
Strand 5
A
565 569parallel
Strand 6
A
518 522parallel
Strand 7
A
538 542parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 546first strand
Strand 2
A
549 550anti-parallel
Strand 3
A
578 579parallel
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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
741 742first strand
Strand 2
A
750 754anti-parallel
Strand 3
A
790 793anti-parallel
Strand 4
A
777 778anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
427 428first strand
Strand 2
B
774 775parallel
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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
491 494first strand
Strand 2
B
639 642anti-parallel
Strand 3
B
621 626anti-parallel
Strand 4
B
596 600parallel
Strand 5
B
565 569parallel
Strand 6
B
518 522parallel
Strand 7
B
538 542parallel
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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
545 546first strand
Strand 2
B
549 550anti-parallel
Strand 3
B
578 579parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
741 742first strand
Strand 2
B
750 754anti-parallel
Strand 3
B
790 793anti-parallel
Strand 4
B
777 778anti-parallel
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