Analysis of interatomic Contacts of Structural Units in PDB entry:
8K3T


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K3T entry

There are 2 chains in PDB entry 8K3T (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO 410PHE 1130
B
 PRO 410PHE 1130
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 58 helices in PDB entry 8K3T. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
410 415Right-handed alpha
Helix 2
AA2
A
424 428Right-handed 310
Helix 3
AA3
A
435 440Right-handed alpha
Helix 4
AA4
A
458 478Right-handed alpha
Helix 5
AA5
A
488 491Right-handed 310
Helix 6
AA6
A
506 516Right-handed alpha
Helix 7
AA7
A
578 587Right-handed alpha
Helix 8
AA8
A
588 594Right-handed alpha
Helix 9
AA9
A
610 618Right-handed alpha
Helix 10
AB1
A
619 621Right-handed 310
Helix 11
AB2
A
636 643Right-handed 310
Helix 12
AB3
A
644 669Right-handed alpha
Helix 13
AB4
A
683 687Right-handed alpha
Helix 14
AB5
A
688 697Right-handed alpha
Helix 15
AB6
A
706 712Right-handed alpha
Helix 16
AB7
A
715 726Right-handed alpha
Helix 17
AB8
A
749 774Right-handed alpha
Helix 18
AB9
A
775 781Right-handed 310
Helix 19
AC1
A
784 807Right-handed alpha
Helix 20
AC2
A
807 828Right-handed alpha
Helix 21
AC3
A
830 856Right-handed alpha
Helix 22
AC4
A
858 860Right-handed 310
Helix 23
AC5
A
861 893Right-handed alpha
Helix 24
AC6
A
911 933Right-handed alpha
Helix 25
AC7
A
942 955Right-handed alpha
Helix 26
AC8
A
955 963Right-handed alpha
Helix 27
AC9
A
1027 1060Right-handed alpha
Helix 28
AD1
A
1063 1074Right-handed alpha
Helix 29
AD2
A
1091 1130Right-handed alpha
Helix 30
AD3
B
411 415Right-handed alpha
Helix 31
AD4
B
424 428Right-handed 310
Helix 32
AD5
B
435 440Right-handed alpha
Helix 33
AD6
B
458 478Right-handed alpha
Helix 34
AD7
B
488 491Right-handed 310
Helix 35
AD8
B
506 516Right-handed alpha
Helix 36
AD9
B
578 587Right-handed alpha
Helix 37
AE1
B
588 594Right-handed alpha
Helix 38
AE2
B
610 618Right-handed alpha
Helix 39
AE3
B
619 621Right-handed 310
Helix 40
AE4
B
636 643Right-handed 310
Helix 41
AE5
B
644 669Right-handed alpha
Helix 42
AE6
B
683 687Right-handed alpha
Helix 43
AE7
B
688 697Right-handed alpha
Helix 44
AE8
B
706 712Right-handed alpha
Helix 45
AE9
B
715 726Right-handed alpha
Helix 46
AF1
B
749 774Right-handed alpha
Helix 47
AF2
B
775 781Right-handed 310
Helix 48
AF3
B
784 807Right-handed alpha
Helix 49
AF4
B
807 828Right-handed alpha
Helix 50
AF5
B
830 856Right-handed alpha
Helix 51
AF6
B
858 860Right-handed 310
Helix 52
AF7
B
861 893Right-handed alpha
Helix 53
AF8
B
911 933Right-handed alpha
Helix 54
AF9
B
942 955Right-handed alpha
Helix 55
AG1
B
955 963Right-handed alpha
Helix 56
AG2
B
1027 1060Right-handed alpha
Helix 57
AG3
B
1063 1074Right-handed alpha
Helix 58
AG4
B
1091 1130Right-handed alpha
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There are 6 sheets in PDB entry 8K3T. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
417 421first strand
Strand 2
A
535 542anti-parallel
Strand 3
A
565 572anti-parallel
Strand 4
A
493 499parallel
Strand 5
A
448 454parallel
Strand 6
A
597 601parallel
Strand 7
A
678 682anti-parallel
Strand 8
A
624 633anti-parallel
Strand 9
A
733 744parallel
Strand 10
A
606 607anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
527 528first strand
Strand 2
A
531 532anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
545 549first strand
Strand 2
A
554 557anti-parallel
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There are 10 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
417 421first strand
Strand 2
B
535 542anti-parallel
Strand 3
B
565 572anti-parallel
Strand 4
B
493 499parallel
Strand 5
B
448 454parallel
Strand 6
B
597 601parallel
Strand 7
B
678 682anti-parallel
Strand 8
B
624 633anti-parallel
Strand 9
B
733 744parallel
Strand 10
B
606 607anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
527 528first strand
Strand 2
B
531 532anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
545 549first strand
Strand 2
B
554 557anti-parallel
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