Analysis of interatomic Contacts of Structural Units in PDB entry:
8K3Y

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K3Y entry

There are 6 chains in PDB entry 8K3Y (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ARG 2	PRO 774
B	ARG 2	PRO 774
C	ARG 2	PRO 774
D	ARG 2	PRO 774
E	ARG 2	PRO 774
F	SER 244	PRO 774

There are175 helices in PDB entry 8K3Y. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	30	39	Right-handed alpha
Helix 2	AA2	A	117	139	Right-handed alpha
Helix 3	AA3	A	140	142	Right-handed 310
Helix 4	AA4	A	146	151	Right-handed alpha
Helix 5	AA5	A	157	169	Right-handed alpha
Helix 6	AA6	A	172	182	Right-handed alpha
Helix 7	AA7	A	184	234	Right-handed alpha
Helix 8	AA8	A	243	255	Right-handed alpha
Helix 9	AA9	A	259	273	Right-handed alpha
Helix 10	AB1	A	280	295	Right-handed alpha
Helix 11	AB2	A	308	318	Right-handed alpha
Helix 12	AB3	A	325	337	Right-handed alpha
Helix 13	AB4	A	360	372	Right-handed alpha
Helix 14	AB5	A	386	391	Right-handed alpha
Helix 15	AB6	A	403	408	Right-handed alpha
Helix 16	AB7	A	435	443	Right-handed alpha
Helix 17	AB8	A	447	451	Right-handed 310
Helix 18	AB9	A	461	465	Right-handed 310
Helix 19	AC1	A	478	482	Right-handed 310
Helix 20	AC2	A	494	505	Right-handed alpha
Helix 21	AC3	A	505	513	Right-handed alpha
Helix 22	AC4	A	523	534	Right-handed alpha
Helix 23	AC5	A	540	557	Right-handed alpha
Helix 24	AC6	A	570	572	Right-handed 310
Helix 25	AC7	A	573	578	Right-handed alpha
Helix 26	AC8	A	630	646	Right-handed alpha
Helix 27	AC9	A	681	693	Right-handed alpha
Helix 28	AD1	A	717	729	Right-handed alpha
Helix 29	AD2	A	736	738	Right-handed 310
Helix 30	AD3	A	739	744	Right-handed alpha
Helix 31	AD4	A	761	766	Right-handed alpha
Helix 32	AD5	B	30	39	Right-handed alpha
Helix 33	AD6	B	117	137	Right-handed alpha
Helix 34	AD7	B	145	152	Right-handed 310
Helix 35	AD8	B	157	168	Right-handed alpha
Helix 36	AD9	B	172	182	Right-handed alpha
Helix 37	AE1	B	184	241	Right-handed alpha
Helix 38	AE2	B	245	255	Right-handed alpha
Helix 39	AE3	B	259	271	Right-handed alpha
Helix 40	AE4	B	280	293	Right-handed alpha
Helix 41	AE5	B	308	319	Right-handed alpha
Helix 42	AE6	B	320	325	Right-handed 310
Helix 43	AE7	B	326	339	Right-handed alpha
Helix 44	AE8	B	340	343	Right-handed 310
Helix 45	AE9	B	360	373	Right-handed alpha
Helix 46	AF1	B	403	413	Right-handed alpha
Helix 47	AF2	B	423	427	Right-handed 310
Helix 48	AF3	B	434	444	Right-handed alpha
Helix 49	AF4	B	478	482	Right-handed 310
Helix 50	AF5	B	494	505	Right-handed alpha
Helix 51	AF6	B	505	515	Right-handed alpha
Helix 52	AF7	B	523	534	Right-handed alpha
Helix 53	AF8	B	540	560	Right-handed alpha
Helix 54	AF9	B	573	578	Right-handed alpha
Helix 55	AG1	B	584	588	Right-handed 310
Helix 56	AG2	B	630	647	Right-handed alpha
Helix 57	AG3	B	679	693	Right-handed alpha
Helix 58	AG4	B	717	728	Right-handed alpha
Helix 59	AG5	B	738	744	Right-handed 310
Helix 60	AG6	B	762	770	Right-handed alpha
Helix 61	AG7	C	27	32	Right-handed alpha
Helix 62	AG8	C	117	139	Right-handed alpha
Helix 63	AG9	C	140	143	Right-handed 310
Helix 64	AH1	C	145	151	Right-handed alpha
Helix 65	AH2	C	157	169	Right-handed alpha
Helix 66	AH3	C	172	182	Right-handed alpha
Helix 67	AH4	C	184	238	Right-handed alpha
Helix 68	AH5	C	238	257	Right-handed alpha
Helix 69	AH6	C	259	271	Right-handed alpha
Helix 70	AH7	C	281	296	Right-handed alpha
Helix 71	AH8	C	307	319	Right-handed alpha
Helix 72	AH9	C	325	338	Right-handed alpha
Helix 73	AI1	C	360	371	Right-handed alpha
Helix 74	AI2	C	380	384	Right-handed 310
Helix 75	AI3	C	386	391	Right-handed alpha
Helix 76	AI4	C	403	411	Right-handed alpha
Helix 77	AI5	C	434	444	Right-handed alpha
Helix 78	AI6	C	444	449	Right-handed alpha
Helix 79	AI7	C	478	482	Right-handed 310
Helix 80	AI8	C	494	505	Right-handed alpha
Helix 81	AI9	C	505	514	Right-handed alpha
Helix 82	AJ1	C	523	534	Right-handed alpha
Helix 83	AJ2	C	540	560	Right-handed alpha
Helix 84	AJ3	C	573	578	Right-handed alpha
Helix 85	AJ4	C	586	590	Right-handed 310
Helix 86	AJ5	C	630	647	Right-handed alpha
Helix 87	AJ6	C	675	680	Right-handed 310
Helix 88	AJ7	C	681	692	Right-handed alpha
Helix 89	AJ8	C	717	728	Right-handed alpha
Helix 90	AJ9	C	738	741	Right-handed 310
Helix 91	AK1	C	747	752	Right-handed alpha
Helix 92	AK2	C	761	770	Right-handed alpha
Helix 93	AK3	D	29	39	Right-handed alpha
Helix 94	AK4	D	117	140	Right-handed alpha
Helix 95	AK5	D	141	143	Right-handed 310
Helix 96	AK6	D	147	152	Right-handed alpha
Helix 97	AK7	D	157	169	Right-handed alpha
Helix 98	AK8	D	172	182	Right-handed alpha
Helix 99	AK9	D	185	233	Right-handed alpha
Helix 100	AL1	D	239	256	Right-handed alpha
Helix 101	AL2	D	259	274	Right-handed alpha
Helix 102	AL3	D	281	295	Right-handed alpha
Helix 103	AL4	D	307	316	Right-handed alpha
Helix 104	AL5	D	325	339	Right-handed alpha
Helix 105	AL6	D	361	373	Right-handed alpha
Helix 106	AL7	D	403	412	Right-handed alpha
Helix 107	AL8	D	423	427	Right-handed 310
Helix 108	AL9	D	434	444	Right-handed alpha
Helix 109	AM1	D	461	465	Right-handed 310
Helix 110	AM2	D	473	477	Right-handed 310
Helix 111	AM3	D	478	482	Right-handed 310
Helix 112	AM4	D	494	505	Right-handed alpha
Helix 113	AM5	D	505	514	Right-handed alpha
Helix 114	AM6	D	523	535	Right-handed alpha
Helix 115	AM7	D	542	560	Right-handed alpha
Helix 116	AM8	D	630	647	Right-handed alpha
Helix 117	AM9	D	679	693	Right-handed alpha
Helix 118	AN1	D	717	727	Right-handed alpha
Helix 119	AN2	D	739	744	Right-handed alpha
Helix 120	AN3	D	747	753	Right-handed alpha
Helix 121	AN4	D	763	770	Right-handed alpha
Helix 122	AN5	E	27	38	Right-handed alpha
Helix 123	AN6	E	39	41	Right-handed 310
Helix 124	AN7	E	58	60	Right-handed 310
Helix 125	AN8	E	117	138	Right-handed alpha
Helix 126	AN9	E	145	152	Right-handed alpha
Helix 127	AO1	E	157	169	Right-handed alpha
Helix 128	AO2	E	174	182	Right-handed alpha
Helix 129	AO3	E	184	237	Right-handed alpha
Helix 130	AO4	E	237	257	Right-handed alpha
Helix 131	AO5	E	259	273	Right-handed alpha
Helix 132	AO6	E	280	295	Right-handed alpha
Helix 133	AO7	E	307	320	Right-handed alpha
Helix 134	AO8	E	322	337	Right-handed alpha
Helix 135	AO9	E	360	372	Right-handed alpha
Helix 136	AP1	E	386	391	Right-handed alpha
Helix 137	AP2	E	403	412	Right-handed alpha
Helix 138	AP3	E	423	427	Right-handed 310
Helix 139	AP4	E	436	444	Right-handed alpha
Helix 140	AP5	E	461	465	Right-handed 310
Helix 141	AP6	E	478	483	Right-handed 310
Helix 142	AP7	E	494	505	Right-handed alpha
Helix 143	AP8	E	505	514	Right-handed alpha
Helix 144	AP9	E	523	535	Right-handed alpha
Helix 145	AQ1	E	540	556	Right-handed alpha
Helix 146	AQ2	E	573	578	Right-handed alpha
Helix 147	AQ3	E	630	646	Right-handed alpha
Helix 148	AQ4	E	679	693	Right-handed alpha
Helix 149	AQ5	E	717	728	Right-handed alpha
Helix 150	AQ6	E	737	744	Right-handed alpha
Helix 151	AQ7	E	747	752	Right-handed alpha
Helix 152	AQ8	E	761	767	Right-handed alpha
Helix 153	AQ9	F	245	252	Right-handed alpha
Helix 154	AR1	F	259	273	Right-handed alpha
Helix 155	AR2	F	280	293	Right-handed alpha
Helix 156	AR3	F	307	319	Right-handed alpha
Helix 157	AR4	F	324	335	Right-handed alpha
Helix 158	AR5	F	360	372	Right-handed alpha
Helix 159	AR6	F	386	391	Right-handed alpha
Helix 160	AR7	F	403	409	Right-handed alpha
Helix 161	AR8	F	435	444	Right-handed alpha
Helix 162	AR9	F	445	450	Right-handed alpha
Helix 163	AS1	F	478	483	Right-handed alpha
Helix 164	AS2	F	494	505	Right-handed alpha
Helix 165	AS3	F	506	515	Right-handed alpha
Helix 166	AS4	F	523	535	Right-handed alpha
Helix 167	AS5	F	540	560	Right-handed alpha
Helix 168	AS6	F	630	647	Right-handed alpha
Helix 169	AS7	F	648	652	Right-handed 310
Helix 170	AS8	F	679	693	Right-handed alpha
Helix 171	AS9	F	717	728	Right-handed alpha
Helix 172	AT1	F	736	746	Right-handed alpha
Helix 173	AT2	F	750	754	Right-handed 310
Helix 174	AT3	F	761	766	Right-handed alpha
Helix 175	AT4	F	767	770	Right-handed 310

There are 41 sheets in PDB entry 8K3Y. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	22	first strand
Strand 2	A	85	87	anti-parallel
Strand 3	A	65	71	anti-parallel
Strand 4	A	91	93	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	21	22	first strand
Strand 2	A	85	87	anti-parallel
Strand 3	A	65	71	anti-parallel
Strand 4	A	43	48	anti-parallel
Strand 5	A	5	10	parallel
Strand 6	A	104	105	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	353	354	first strand
Strand 2	A	488	489	parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	376	378	first strand
Strand 2	A	418	420	parallel
Strand 3	A	466	468	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	520	522	first strand
Strand 2	A	567	569	parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	596	597	first strand
Strand 2	A	612	614	anti-parallel
Strand 3	A	665	666	anti-parallel
Strand 4	A	625	626	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	600	603	first strand
Strand 2	A	606	609	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	732	734	first strand
Strand 2	A	755	757	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	5	6	first strand
Strand 2	B	104	105	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	23	25	first strand
Strand 2	B	82	93	anti-parallel
Strand 3	B	65	76	anti-parallel
Strand 4	B	43	47	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	376	379	first strand
Strand 2	B	418	421	parallel
Strand 3	B	466	468	parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	520	522	first strand
Strand 2	B	567	569	parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	596	601	first strand
Strand 2	B	608	615	anti-parallel
Strand 3	B	662	666	anti-parallel
Strand 4	B	622	626	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	732	736	first strand
Strand 2	B	755	759	parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	25	first strand
Strand 2	C	82	98	anti-parallel
Strand 3	C	62	75	anti-parallel
Strand 4	C	43	49	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	21	25	first strand
Strand 2	C	82	98	anti-parallel
Strand 3	C	104	107	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	350	354	first strand
Strand 2	C	485	489	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	376	377	first strand
Strand 2	C	418	422	parallel
Strand 3	C	466	470	parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	520	522	first strand
Strand 2	C	567	569	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	593	594	first strand
Strand 2	C	695	696	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	598	600	first strand
Strand 2	C	609	611	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	613	618	first strand
Strand 2	C	661	666	anti-parallel
Strand 3	C	623	626	parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	700	701	first strand
Strand 2	C	732	736	parallel
Strand 3	C	755	759	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	21	22	first strand
Strand 2	D	85	93	anti-parallel
Strand 3	D	65	73	anti-parallel
Strand 4	D	43	46	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	379	380	first strand
Strand 2	D	418	422	parallel
Strand 3	D	466	470	parallel
Strand 4	D	350	354	parallel
Strand 5	D	485	489	parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	520	522	first strand
Strand 2	D	567	569	parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	600	602	first strand
Strand 2	D	607	609	anti-parallel

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There are 3 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	613	618	first strand
Strand 2	D	661	666	anti-parallel
Strand 3	D	623	626	parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	700	701	first strand
Strand 2	D	732	736	parallel
Strand 3	D	755	759	parallel

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There are 4 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	20	25	first strand
Strand 2	E	82	93	anti-parallel
Strand 3	E	62	73	anti-parallel
Strand 4	E	43	49	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	96	98	first strand
Strand 2	E	104	106	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	352	354	first strand
Strand 2	E	487	489	parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	375	376	first strand
Strand 2	E	417	421	parallel
Strand 3	E	467	469	parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	520	522	first strand
Strand 2	E	567	569	parallel

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There are 2 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	601	602	first strand
Strand 2	E	607	608	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	613	615	first strand
Strand 2	E	664	670	anti-parallel
Strand 3	E	625	628	parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	700	702	first strand
Strand 2	E	732	736	parallel
Strand 3	E	755	759	parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	351	352	first strand
Strand 2	F	468	470	parallel
Strand 3	F	418	422	parallel
Strand 4	F	376	378	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	601	602	first strand
Strand 2	F	607	608	anti-parallel

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There are 3 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	613	618	first strand
Strand 2	F	661	666	anti-parallel
Strand 3	F	623	626	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	732	735	first strand
Strand 2	F	755	758	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K3Y

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K3Y