Analysis of interatomic Contacts of Structural Units in PDB entry:
8K40


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K40 entry

There are 2 chains in PDB entry 8K40 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LEU 448
B
 TYR 4LEU 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 31 helices in PDB entry 8K40. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
39 45Right-handed alpha
Helix 3
AA3
A
45 65Right-handed alpha
Helix 4
AA4
A
77 102Right-handed alpha
Helix 5
AA5
A
147 151Right-handed 310
Helix 6
AA6
A
153 158Right-handed alpha
Helix 7
AA7
A
173 186Right-handed alpha
Helix 8
AA8
A
204 218Right-handed alpha
Helix 9
AA9
A
270 275Right-handed 310
Helix 10
AB1
A
311 329Right-handed alpha
Helix 11
AB2
A
355 362Right-handed alpha
Helix 12
AB3
A
376 382Right-handed alpha
Helix 13
AB4
A
409 423Right-handed alpha
Helix 14
AB5
A
426 432Right-handed alpha
Helix 15
AB6
A
440 448Right-handed 310
Helix 16
AB7
B
12 24Right-handed alpha
Helix 17
AB8
B
39 45Right-handed alpha
Helix 18
AB9
B
45 65Right-handed alpha
Helix 19
AC1
B
77 102Right-handed alpha
Helix 20
AC2
B
147 151Right-handed 310
Helix 21
AC3
B
153 158Right-handed alpha
Helix 22
AC4
B
173 186Right-handed alpha
Helix 23
AC5
B
204 218Right-handed alpha
Helix 24
AC6
B
270 275Right-handed 310
Helix 25
AC7
B
301 304Right-handed 310
Helix 26
AC8
B
311 329Right-handed alpha
Helix 27
AC9
B
355 362Right-handed alpha
Helix 28
AD1
B
376 382Right-handed alpha
Helix 29
AD2
B
409 423Right-handed alpha
Helix 30
AD3
B
426 432Right-handed alpha
Helix 31
AD4
B
439 448Right-handed 310
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There are 10 sheets in PDB entry 8K40. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
29 32parallel
Strand 3
A
6 9parallel
Strand 4
A
131 134parallel
Strand 5
A
297 299parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
112 116first strand
Strand 2
A
119 122anti-parallel
Strand 3
A
125 128anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
220 223first strand
Strand 2
A
189 193parallel
Strand 3
A
166 170parallel
Strand 4
A
255 258parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 232first strand
Strand 2
A
238 243anti-parallel
Strand 3
A
248 253anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
282 284anti-parallel
Strand 3
A
304 305parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
348 353anti-parallel
Strand 3
A
399 407anti-parallel
Strand 4
A
388 394anti-parallel
Strand 5
A
366 372anti-parallel
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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
105 108first strand
Strand 2
B
29 32parallel
Strand 3
B
6 9parallel
Strand 4
B
131 134parallel
Strand 5
B
297 299parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
220 223first strand
Strand 2
B
189 193parallel
Strand 3
B
166 170parallel
Strand 4
B
256 258parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
227 232first strand
Strand 2
B
239 243anti-parallel
Strand 3
B
250 252anti-parallel
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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
341 343first strand
Strand 2
B
348 353anti-parallel
Strand 3
B
399 407anti-parallel
Strand 4
B
388 394anti-parallel
Strand 5
B
366 372anti-parallel
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