Analysis of interatomic Contacts of Structural Units in PDB entry:
8K41


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K41 entry

There is 1 chain in PDB entry 8K41 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 2LEU 448
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 16 helices in PDB entry 8K41. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
12 24Right-handed alpha
Helix 2
AA2
A
38 45Right-handed alpha
Helix 3
AA3
A
45 65Right-handed alpha
Helix 4
AA4
A
77 91Right-handed alpha
Helix 5
AA5
A
91 103Right-handed alpha
Helix 6
AA6
A
147 151Right-handed 310
Helix 7
AA7
A
153 160Right-handed alpha
Helix 8
AA8
A
173 186Right-handed alpha
Helix 9
AA9
A
204 218Right-handed alpha
Helix 10
AB1
A
270 275Right-handed 310
Helix 11
AB2
A
311 329Right-handed alpha
Helix 12
AB3
A
355 362Right-handed alpha
Helix 13
AB4
A
376 383Right-handed alpha
Helix 14
AB5
A
409 423Right-handed alpha
Helix 15
AB6
A
426 433Right-handed alpha
Helix 16
AB7
A
439 448Right-handed 310
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There are 6 sheets in PDB entry 8K41. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
29 32parallel
Strand 3
A
3 9parallel
Strand 4
A
125 134parallel
Strand 5
A
119 122anti-parallel
Strand 6
A
112 116anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
105 108first strand
Strand 2
A
29 32parallel
Strand 3
A
3 9parallel
Strand 4
A
125 134parallel
Strand 5
A
297 299parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
221 223first strand
Strand 2
A
189 193parallel
Strand 3
A
166 170parallel
Strand 4
A
255 258parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
227 234first strand
Strand 2
A
237 243anti-parallel
Strand 3
A
248 253anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
278 279first strand
Strand 2
A
282 284anti-parallel
Strand 3
A
304 305parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
341 343first strand
Strand 2
A
349 353anti-parallel
Strand 3
A
399 406anti-parallel
Strand 4
A
388 394anti-parallel
Strand 5
A
366 372anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il