Analysis of interatomic Contacts of Structural Units in PDB entry:
8K46

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K46 entry

There are 6 chains in PDB entry 8K46 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
E	SER 1	SER 126
G	SER 1	SER 124
I	SER 1	SER 124
A	THR 29	GLU 1150
B	THR 29	GLU 1150
C	THR 29	GLU 1150

There are 66 helices in PDB entry 8K46. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	E	88	92	Right-handed 310
Helix 2	AA2	A	294	304	Right-handed alpha
Helix 3	AA3	A	349	353	Right-handed 310
Helix 4	AA4	A	364	370	Right-handed alpha
Helix 5	AA5	A	383	388	Right-handed alpha
Helix 6	AA6	A	438	443	Right-handed alpha
Helix 7	AA7	A	502	506	Right-handed 310
Helix 8	AA8	A	633	637	Right-handed 310
Helix 9	AA9	A	737	742	Right-handed alpha
Helix 10	AB1	A	746	755	Right-handed alpha
Helix 11	AB2	A	758	783	Right-handed alpha
Helix 12	AB3	A	802	806	Right-handed 310
Helix 13	AB4	A	816	826	Right-handed alpha
Helix 14	AB5	A	866	885	Right-handed alpha
Helix 15	AB6	A	886	891	Right-handed 310
Helix 16	AB7	A	897	908	Right-handed alpha
Helix 17	AB8	A	913	919	Right-handed alpha
Helix 18	AB9	A	919	941	Right-handed alpha
Helix 19	AC1	A	942	944	Right-handed 310
Helix 20	AC2	A	945	965	Right-handed alpha
Helix 21	AC3	A	966	968	Right-handed 310
Helix 22	AC4	A	976	984	Right-handed alpha
Helix 23	AC5	A	985	1033	Right-handed alpha
Helix 24	AC6	A	1141	1150	Right-handed alpha
Helix 25	AC7	B	294	303	Right-handed alpha
Helix 26	AC8	B	364	369	Right-handed alpha
Helix 27	AC9	B	383	390	Right-handed alpha
Helix 28	AD1	B	405	407	Right-handed 310
Helix 29	AD2	B	502	505	Right-handed 310
Helix 30	AD3	B	633	637	Right-handed 310
Helix 31	AD4	B	737	743	Right-handed alpha
Helix 32	AD5	B	746	754	Right-handed alpha
Helix 33	AD6	B	755	759	Right-handed 310
Helix 34	AD7	B	760	783	Right-handed alpha
Helix 35	AD8	B	816	826	Right-handed alpha
Helix 36	AD9	B	852	856	Right-handed 310
Helix 37	AE1	B	866	885	Right-handed alpha
Helix 38	AE2	B	886	891	Right-handed 310
Helix 39	AE3	B	897	908	Right-handed alpha
Helix 40	AE4	B	912	918	Right-handed alpha
Helix 41	AE5	B	919	941	Right-handed alpha
Helix 42	AE6	B	945	965	Right-handed alpha
Helix 43	AE7	B	976	984	Right-handed alpha
Helix 44	AE8	B	985	1033	Right-handed alpha
Helix 45	AE9	B	1140	1150	Right-handed alpha
Helix 46	AF1	C	294	303	Right-handed alpha
Helix 47	AF2	C	383	387	Right-handed 310
Helix 48	AF3	C	405	407	Right-handed 310
Helix 49	AF4	C	416	421	Right-handed alpha
Helix 50	AF5	C	438	443	Right-handed alpha
Helix 51	AF6	C	543	546	Right-handed 310
Helix 52	AF7	C	633	637	Right-handed 310
Helix 53	AF8	C	737	742	Right-handed alpha
Helix 54	AF9	C	746	755	Right-handed alpha
Helix 55	AG1	C	760	783	Right-handed alpha
Helix 56	AG2	C	816	826	Right-handed alpha
Helix 57	AG3	C	850	854	Right-handed alpha
Helix 58	AG4	C	866	885	Right-handed alpha
Helix 59	AG5	C	886	891	Right-handed 310
Helix 60	AG6	C	897	909	Right-handed alpha
Helix 61	AG7	C	912	918	Right-handed alpha
Helix 62	AG8	C	919	941	Right-handed alpha
Helix 63	AG9	C	945	966	Right-handed alpha
Helix 64	AH1	C	976	984	Right-handed alpha
Helix 65	AH2	C	988	1033	Right-handed alpha
Helix 66	AH3	C	1141	1150	Right-handed alpha

There are 62 sheets in PDB entry 8K46. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1, AG2, AG3, AG4, AG5, AG6, AG7, AG8,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	6	8	first strand
Strand 2	E	22	24	anti-parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	11	13	first strand
Strand 2	E	120	122	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	46	52	first strand
Strand 2	E	35	40	anti-parallel
Strand 3	E	95	97	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	10	13	first strand
Strand 2	G	119	122	parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	59	60	first strand
Strand 2	G	46	52	anti-parallel
Strand 3	G	35	40	anti-parallel
Strand 4	G	94	100	anti-parallel
Strand 5	G	111	114	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	70	72	first strand
Strand 2	G	81	83	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	4	8	first strand
Strand 2	I	22	26	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	13	first strand
Strand 2	I	121	122	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	34	35	first strand
Strand 2	I	99	100	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	46	48	first strand
Strand 2	I	38	40	anti-parallel
Strand 3	I	94	96	anti-parallel
Strand 4	I	117	119	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	71	73	first strand
Strand 2	I	80	82	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	30	31	first strand
Strand 2	A	60	61	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	43	first strand
Strand 2	B	565	566	parallel

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There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	276	279	anti-parallel
Strand 3	A	285	289	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	271	273	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	192	193	first strand
Strand 2	A	91	92	anti-parallel
Strand 3	A	267	268	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	105	first strand
Strand 2	A	239	241	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	126	127	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	131	first strand
Strand 2	A	166	167	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	200	204	anti-parallel
Strand 3	A	225	229	anti-parallel

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There are 5 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	318	first strand
Strand 2	A	593	600	anti-parallel
Strand 3	A	609	612	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	642	645	anti-parallel

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There are 5 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	324	325	first strand
Strand 2	A	538	542	parallel
Strand 3	A	547	554	anti-parallel
Strand 4	A	583	588	anti-parallel
Strand 5	A	575	578	anti-parallel

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There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	402	anti-parallel
Strand 3	A	508	516	anti-parallel
Strand 4	A	431	436	anti-parallel
Strand 5	A	375	380	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	664	667	first strand
Strand 2	A	670	674	anti-parallel
Strand 3	A	692	693	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	704	first strand
Strand 2	C	788	790	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1077	anti-parallel
Strand 3	A	1054	1056	anti-parallel

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There are 5 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1047	1051	first strand
Strand 2	A	1059	1077	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel
Strand 5	A	1113	1114	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	735	736	first strand
Strand 2	A	858	859	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	790	first strand
Strand 2	B	701	704	parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1125	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	30	31	first strand
Strand 2	B	60	61	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	271	273	anti-parallel

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There are 5 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	224	230	first strand
Strand 2	B	200	205	anti-parallel
Strand 3	B	192	197	anti-parallel
Strand 4	B	90	92	anti-parallel
Strand 5	B	268	269	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	105	first strand
Strand 2	B	118	121	anti-parallel
Strand 3	B	126	129	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	190	first strand
Strand 2	B	207	210	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	279	first strand
Strand 2	B	285	289	anti-parallel

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There are 5 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	318	first strand
Strand 2	B	593	599	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	650	anti-parallel
Strand 5	B	643	645	anti-parallel

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There are 5 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	327	first strand
Strand 2	B	538	543	parallel
Strand 3	B	546	554	anti-parallel
Strand 4	B	584	588	anti-parallel
Strand 5	B	575	577	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	507	512	anti-parallel
Strand 4	B	434	437	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	394	403	anti-parallel
Strand 3	B	515	516	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	664	665	first strand
Strand 2	B	671	675	anti-parallel
Strand 3	B	691	693	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	719	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 4 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	725	728	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	1094	1097	anti-parallel
Strand 4	B	1102	1105	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	787	790	first strand
Strand 2	C	701	704	parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1081	1082	first strand
Strand 2	B	1086	1090	anti-parallel
Strand 3	B	1120	1125	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	51	first strand
Strand 2	C	275	278	anti-parallel
Strand 3	C	288	290	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	271	272	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	241	anti-parallel
Strand 3	C	103	107	anti-parallel
Strand 4	C	116	118	anti-parallel

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There are 5 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	229	first strand
Strand 2	C	200	206	anti-parallel
Strand 3	C	191	197	anti-parallel
Strand 4	C	90	93	anti-parallel
Strand 5	C	266	267	anti-parallel

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There are 5 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	311	318	first strand
Strand 2	C	593	599	anti-parallel
Strand 3	C	609	612	anti-parallel
Strand 4	C	649	651	anti-parallel
Strand 5	C	642	644	anti-parallel

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There are 3 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	326	first strand
Strand 2	C	538	541	parallel
Strand 3	C	548	551	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	375	380	first strand
Strand 2	C	431	437	anti-parallel
Strand 3	C	507	514	anti-parallel
Strand 4	C	396	403	anti-parallel

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There are 2 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AG2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 3 strands in AG3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	664	665	first strand
Strand 2	C	671	675	anti-parallel
Strand 3	C	691	693	anti-parallel

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There are 3 strands in AG4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	722	first strand
Strand 2	C	1065	1076	anti-parallel
Strand 3	C	1047	1048	anti-parallel

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There are 3 strands in AG5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	725	728	first strand
Strand 2	C	1059	1063	anti-parallel
Strand 3	C	1052	1056	anti-parallel

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There are 2 strands in AG6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	733	735	first strand
Strand 2	C	859	861	anti-parallel

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There are 4 strands in AG7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1125	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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There are 2 strands in AG8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1094	1097	first strand
Strand 2	C	1102	1105	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K46

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K46