Analysis of interatomic Contacts of Structural Units in PDB entry:
8K47

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K47 entry

There are 4 chains in PDB entry 8K47 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
I	SER 1	SER 124
A	THR 29	GLU 1150
B	THR 29	GLU 1150
C	THR 29	GLU 1150

There are 62 helices in PDB entry 8K47. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	294	304	Right-handed alpha
Helix 2	AA2	A	349	353	Right-handed 310
Helix 3	AA3	A	364	370	Right-handed alpha
Helix 4	AA4	A	383	389	Right-handed alpha
Helix 5	AA5	A	438	443	Right-handed alpha
Helix 6	AA6	A	502	506	Right-handed 310
Helix 7	AA7	A	633	637	Right-handed 310
Helix 8	AA8	A	737	742	Right-handed alpha
Helix 9	AA9	A	746	757	Right-handed alpha
Helix 10	AB1	A	758	783	Right-handed alpha
Helix 11	AB2	A	816	826	Right-handed alpha
Helix 12	AB3	A	866	885	Right-handed alpha
Helix 13	AB4	A	886	891	Right-handed 310
Helix 14	AB5	A	897	910	Right-handed alpha
Helix 15	AB6	A	913	918	Right-handed alpha
Helix 16	AB7	A	919	941	Right-handed alpha
Helix 17	AB8	A	945	965	Right-handed alpha
Helix 18	AB9	A	966	968	Right-handed 310
Helix 19	AC1	A	976	984	Right-handed alpha
Helix 20	AC2	A	985	1033	Right-handed alpha
Helix 21	AC3	A	1140	1150	Right-handed alpha
Helix 22	AC4	B	294	303	Right-handed alpha
Helix 23	AC5	B	364	370	Right-handed alpha
Helix 24	AC6	B	405	407	Right-handed 310
Helix 25	AC7	B	416	421	Right-handed alpha
Helix 26	AC8	B	543	546	Right-handed 310
Helix 27	AC9	B	633	638	Right-handed 310
Helix 28	AD1	B	737	743	Right-handed alpha
Helix 29	AD2	B	746	754	Right-handed alpha
Helix 30	AD3	B	755	759	Right-handed 310
Helix 31	AD4	B	760	783	Right-handed alpha
Helix 32	AD5	B	816	826	Right-handed alpha
Helix 33	AD6	B	850	854	Right-handed alpha
Helix 34	AD7	B	866	885	Right-handed alpha
Helix 35	AD8	B	886	891	Right-handed 310
Helix 36	AD9	B	897	910	Right-handed alpha
Helix 37	AE1	B	912	918	Right-handed alpha
Helix 38	AE2	B	919	941	Right-handed alpha
Helix 39	AE3	B	942	944	Right-handed 310
Helix 40	AE4	B	945	965	Right-handed alpha
Helix 41	AE5	B	976	984	Right-handed alpha
Helix 42	AE6	B	985	1033	Right-handed alpha
Helix 43	AE7	B	1140	1150	Right-handed alpha
Helix 44	AE8	C	294	303	Right-handed alpha
Helix 45	AE9	C	405	408	Right-handed 310
Helix 46	AF1	C	416	421	Right-handed alpha
Helix 47	AF2	C	543	546	Right-handed 310
Helix 48	AF3	C	633	637	Right-handed 310
Helix 49	AF4	C	737	742	Right-handed alpha
Helix 50	AF5	C	746	755	Right-handed alpha
Helix 51	AF6	C	760	783	Right-handed alpha
Helix 52	AF7	C	816	826	Right-handed alpha
Helix 53	AF8	C	851	855	Right-handed 310
Helix 54	AF9	C	866	885	Right-handed alpha
Helix 55	AG1	C	886	891	Right-handed 310
Helix 56	AG2	C	897	910	Right-handed alpha
Helix 57	AG3	C	912	918	Right-handed alpha
Helix 58	AG4	C	919	941	Right-handed alpha
Helix 59	AG5	C	945	966	Right-handed alpha
Helix 60	AG6	C	976	983	Right-handed alpha
Helix 61	AG7	C	985	1033	Right-handed alpha
Helix 62	AG8	C	1141	1150	Right-handed alpha

There are 54 sheets in PDB entry 8K47. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	8	first strand
Strand 2	I	20	29	anti-parallel
Strand 3	I	80	83	anti-parallel
Strand 4	I	72	73	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	2	8	first strand
Strand 2	I	20	29	anti-parallel
Strand 3	C	374	376	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	12	13	first strand
Strand 2	I	121	122	parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	59	60	first strand
Strand 2	I	46	52	anti-parallel
Strand 3	I	34	40	anti-parallel
Strand 4	I	99	100	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	I	94	96	first strand
Strand 2	I	117	119	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	42	44	first strand
Strand 2	B	565	567	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	48	50	first strand
Strand 2	A	276	279	anti-parallel
Strand 3	A	285	289	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	271	273	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	200	206	anti-parallel
Strand 3	A	225	229	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	196	197	first strand
Strand 2	A	200	206	anti-parallel
Strand 3	A	191	193	anti-parallel
Strand 4	A	90	94	anti-parallel
Strand 5	A	265	269	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	103	106	first strand
Strand 2	A	238	241	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	130	131	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	120	121	first strand
Strand 2	A	126	127	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	310	318	first strand
Strand 2	A	593	600	anti-parallel
Strand 3	A	609	612	anti-parallel
Strand 4	A	648	651	anti-parallel
Strand 5	A	642	645	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	354	358	first strand
Strand 2	A	394	402	anti-parallel
Strand 3	A	508	516	anti-parallel
Strand 4	A	434	436	anti-parallel
Strand 5	A	375	377	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	452	454	first strand
Strand 2	A	492	494	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	538	542	first strand
Strand 2	A	547	554	anti-parallel
Strand 3	A	583	588	anti-parallel
Strand 4	A	575	578	anti-parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	664	667	first strand
Strand 2	A	670	674	anti-parallel
Strand 3	A	692	693	anti-parallel

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There are 2 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	702	704	first strand
Strand 2	C	788	790	parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1077	anti-parallel
Strand 3	A	1047	1056	anti-parallel

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There are 4 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	711	728	first strand
Strand 2	A	1059	1077	anti-parallel
Strand 3	A	1094	1097	anti-parallel
Strand 4	A	1102	1105	anti-parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	733	736	first strand
Strand 2	A	858	861	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	787	790	first strand
Strand 2	B	701	704	parallel

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There are 4 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1120	1125	first strand
Strand 2	A	1086	1090	anti-parallel
Strand 3	A	1081	1082	anti-parallel
Strand 4	A	1133	1134	parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	55	first strand
Strand 2	B	271	273	anti-parallel

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There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	192	197	anti-parallel
Strand 3	B	200	204	anti-parallel
Strand 4	B	225	230	anti-parallel

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There are 2 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	103	107	first strand
Strand 2	B	237	241	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	119	121	first strand
Strand 2	B	126	128	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	276	279	first strand
Strand 2	B	285	289	anti-parallel

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There are 5 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	310	318	first strand
Strand 2	B	593	600	anti-parallel
Strand 3	B	609	613	anti-parallel
Strand 4	B	648	650	anti-parallel
Strand 5	B	643	645	anti-parallel

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There are 5 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	326	327	first strand
Strand 2	B	538	541	parallel
Strand 3	B	548	554	anti-parallel
Strand 4	B	582	588	anti-parallel
Strand 5	B	575	578	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	356	358	first strand
Strand 2	B	395	397	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	400	403	first strand
Strand 2	B	507	513	anti-parallel
Strand 3	B	432	437	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	452	454	first strand
Strand 2	B	492	494	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	664	667	first strand
Strand 2	B	670	675	anti-parallel
Strand 3	B	691	693	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	711	719	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	1047	1056	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	722	728	first strand
Strand 2	B	1059	1077	anti-parallel
Strand 3	B	1094	1097	anti-parallel
Strand 4	B	1102	1105	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	787	790	first strand
Strand 2	C	701	704	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1081	1082	first strand
Strand 2	B	1133	1134	parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1086	1090	first strand
Strand 2	B	1120	1125	anti-parallel

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There are 3 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	48	51	first strand
Strand 2	C	275	278	anti-parallel
Strand 3	C	288	290	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	54	55	first strand
Strand 2	C	271	272	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	84	85	first strand
Strand 2	C	237	241	anti-parallel
Strand 3	C	103	107	anti-parallel
Strand 4	C	117	118	anti-parallel

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There are 5 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	225	229	first strand
Strand 2	C	200	206	anti-parallel
Strand 3	C	190	197	anti-parallel
Strand 4	C	90	94	anti-parallel
Strand 5	C	266	267	anti-parallel

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There are 5 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	309	318	first strand
Strand 2	C	593	601	anti-parallel
Strand 3	C	609	612	anti-parallel
Strand 4	C	649	651	anti-parallel
Strand 5	C	642	644	anti-parallel

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There are 3 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	325	326	first strand
Strand 2	C	538	541	parallel
Strand 3	C	548	551	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	378	380	first strand
Strand 2	C	431	437	anti-parallel
Strand 3	C	507	514	anti-parallel
Strand 4	C	396	403	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	452	454	first strand
Strand 2	C	492	494	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	473	474	first strand
Strand 2	C	488	489	anti-parallel

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There are 3 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	664	665	first strand
Strand 2	C	671	675	anti-parallel
Strand 3	C	691	693	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1047	1056	anti-parallel

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There are 4 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	711	728	first strand
Strand 2	C	1059	1078	anti-parallel
Strand 3	C	1094	1097	anti-parallel
Strand 4	C	1102	1105	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	733	734	first strand
Strand 2	C	860	861	anti-parallel

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There are 4 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1120	1125	first strand
Strand 2	C	1086	1090	anti-parallel
Strand 3	C	1081	1082	anti-parallel
Strand 4	C	1133	1134	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K47

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K47