Analysis of interatomic Contacts of Structural Units in PDB entry:
8K4B


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K4B entry

There are 2 chains in PDB entry 8K4B (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 155SER 717
B
 LEU 155SER 717
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8K4B. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
158 163Right-handed alpha
Helix 2
AA2
A
168 195Right-handed alpha
Helix 3
AA3
A
202 251Right-handed alpha
Helix 4
AA4
A
253 260Right-handed alpha
Helix 5
AA5
A
262 271Right-handed alpha
Helix 6
AA6
A
273 292Right-handed alpha
Helix 7
AA7
A
292 304Right-handed alpha
Helix 8
AA8
A
305 313Right-handed alpha
Helix 9
AA9
A
314 323Right-handed alpha
Helix 10
AB1
A
326 353Right-handed alpha
Helix 11
AB2
A
353 361Right-handed alpha
Helix 12
AB3
A
362 416Right-handed alpha
Helix 13
AB4
A
420 443Right-handed alpha
Helix 14
AB5
A
444 463Right-handed alpha
Helix 15
AB6
A
522 532Right-handed alpha
Helix 16
AB7
A
552 559Right-handed alpha
Helix 17
AB8
A
573 579Right-handed alpha
Helix 18
AB9
A
588 598Right-handed alpha
Helix 19
AC1
A
623 638Right-handed alpha
Helix 20
AC2
A
653 664Right-handed alpha
Helix 21
AC3
A
677 684Right-handed alpha
Helix 22
AC4
A
700 707Right-handed alpha
Helix 23
AC5
A
709 716Right-handed alpha
Helix 24
AC6
B
158 163Right-handed alpha
Helix 25
AC7
B
168 195Right-handed alpha
Helix 26
AC8
B
202 251Right-handed alpha
Helix 27
AC9
B
253 260Right-handed alpha
Helix 28
AD1
B
262 271Right-handed alpha
Helix 29
AD2
B
274 292Right-handed alpha
Helix 30
AD3
B
292 304Right-handed alpha
Helix 31
AD4
B
305 313Right-handed alpha
Helix 32
AD5
B
314 323Right-handed alpha
Helix 33
AD6
B
326 353Right-handed alpha
Helix 34
AD7
B
353 361Right-handed alpha
Helix 35
AD8
B
362 416Right-handed alpha
Helix 36
AD9
B
420 443Right-handed alpha
Helix 37
AE1
B
444 463Right-handed alpha
Helix 38
AE2
B
522 532Right-handed alpha
Helix 39
AE3
B
552 559Right-handed alpha
Helix 40
AE4
B
573 579Right-handed alpha
Helix 41
AE5
B
588 598Right-handed alpha
Helix 42
AE6
B
623 638Right-handed alpha
Helix 43
AE7
B
653 664Right-handed alpha
Helix 44
AE8
B
677 684Right-handed alpha
Helix 45
AE9
B
700 707Right-handed alpha
Helix 46
AF1
B
709 716Right-handed alpha
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There are 4 sheets in PDB entry 8K4B. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
500 503first strand
Strand 2
A
485 491anti-parallel
Strand 3
A
538 542anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
560 561first strand
Strand 2
A
642 644parallel
Strand 3
A
670 675parallel
Strand 4
A
512 517parallel
Strand 5
A
686 690parallel
Strand 6
A
695 699anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
500 503first strand
Strand 2
B
485 491anti-parallel
Strand 3
B
538 542anti-parallel
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There are 6 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
560 561first strand
Strand 2
B
642 644parallel
Strand 3
B
670 675parallel
Strand 4
B
512 517parallel
Strand 5
B
686 690parallel
Strand 6
B
695 699anti-parallel
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