Analysis of interatomic Contacts of Structural Units in PDB entry:
8K4D


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K4D entry

There are 3 chains in PDB entry 8K4D (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 83LEU 1048
B
 ARG 322THR 394
C
 ILE 41ASN 49
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 56 helices in PDB entry 8K4D. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
83 90Right-handed alpha
Helix 2
AA2
A
94 109Right-handed alpha
Helix 3
AA3
A
109 125Right-handed alpha
Helix 4
AA4
A
132 139Right-handed alpha
Helix 5
AA5
A
140 151Right-handed alpha
Helix 6
AA6
A
159 163Right-handed 310
Helix 7
AA7
A
165 187Right-handed alpha
Helix 8
AA8
A
196 208Right-handed alpha
Helix 9
AA9
A
212 253Right-handed alpha
Helix 10
AB1
A
261 290Right-handed alpha
Helix 11
AB2
A
292 297Right-handed alpha
Helix 12
AB3
A
301 319Right-handed alpha
Helix 13
AB4
A
319 324Right-handed alpha
Helix 14
AB5
A
325 336Right-handed alpha
Helix 15
AB6
A
340 357Right-handed alpha
Helix 16
AB7
A
362 378Right-handed alpha
Helix 17
AB8
A
379 381Right-handed 310
Helix 18
AB9
A
383 401Right-handed alpha
Helix 19
AC1
A
407 416Right-handed alpha
Helix 20
AC2
A
417 419Right-handed 310
Helix 21
AC3
A
421 437Right-handed alpha
Helix 22
AC4
A
457 471Right-handed alpha
Helix 23
AC5
A
477 484Right-handed alpha
Helix 24
AC6
A
488 493Right-handed alpha
Helix 25
AC7
A
494 504Right-handed alpha
Helix 26
AC8
A
514 534Right-handed alpha
Helix 27
AC9
A
549 578Right-handed alpha
Helix 28
AD1
A
581 589Right-handed alpha
Helix 29
AD2
A
590 596Right-handed 310
Helix 30
AD3
A
597 602Right-handed alpha
Helix 31
AD4
A
605 621Right-handed alpha
Helix 32
AD5
A
625 640Right-handed alpha
Helix 33
AD6
A
646 673Right-handed alpha
Helix 34
AD7
A
680 699Right-handed alpha
Helix 35
AD8
A
703 707Right-handed 310
Helix 36
AD9
A
708 723Right-handed alpha
Helix 37
AE1
A
726 747Right-handed alpha
Helix 38
AE2
A
757 776Right-handed alpha
Helix 39
AE3
A
780 798Right-handed alpha
Helix 40
AE4
A
799 804Right-handed 310
Helix 41
AE5
A
818 833Right-handed alpha
Helix 42
AE6
A
849 874Right-handed alpha
Helix 43
AE7
A
878 881Right-handed 310
Helix 44
AE8
A
882 887Right-handed alpha
Helix 45
AE9
A
896 909Right-handed alpha
Helix 46
AF1
A
911 932Right-handed alpha
Helix 47
AF2
A
942 957Right-handed alpha
Helix 48
AF3
A
967 982Right-handed alpha
Helix 49
AF4
A
998 1008Right-handed alpha
Helix 50
AF5
A
1013 1024Right-handed alpha
Helix 51
AF6
A
1038 1046Right-handed alpha
Helix 52
AF7
B
333 343Right-handed alpha
Helix 53
AF8
B
344 347Right-handed 310
Helix 54
AF9
B
357 366Right-handed alpha
Helix 55
AG1
B
367 374Right-handed alpha
Helix 56
AG2
B
382 392Right-handed alpha
Back to top of page
There are no sheets in PDB entry 8K4D
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il