Analysis of interatomic Contacts of Structural Units in PDB entry:
8K51


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K51 entry

There are 2 chains in PDB entry 8K51 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
B
 GLY -7SER 273
A
 SER 5ARG 272
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 21 helices in PDB entry 8K51. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
B
-1 5Right-handed alpha
Helix 2
AA2
B
7 15Right-handed alpha
Helix 3
AA3
B
24 39Right-handed alpha
Helix 4
AA4
B
44 49Right-handed 310
Helix 5
AA5
B
55 65Right-handed alpha
Helix 6
AA6
B
71 86Right-handed alpha
Helix 7
AA7
B
183 188Right-handed alpha
Helix 8
AA8
B
188 197Right-handed alpha
Helix 9
AA9
B
239 251Right-handed alpha
Helix 10
AB1
B
254 256Right-handed 310
Helix 11
AB2
B
257 271Right-handed alpha
Helix 12
AB3
A
7 15Right-handed alpha
Helix 13
AB4
A
24 39Right-handed alpha
Helix 14
AB5
A
45 49Right-handed 310
Helix 15
AB6
A
55 65Right-handed alpha
Helix 16
AB7
A
71 86Right-handed alpha
Helix 17
AB8
A
183 188Right-handed alpha
Helix 18
AB9
A
188 197Right-handed alpha
Helix 19
AC1
A
239 251Right-handed alpha
Helix 20
AC2
A
254 256Right-handed 310
Helix 21
AC3
A
257 272Right-handed alpha
Back to top of page

There are 5 sheets in PDB entry 8K51. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
41 42first strand
Strand 2
B
207 212anti-parallel
Strand 3
B
215 220anti-parallel
Strand 4
B
223 228anti-parallel
Strand 5
B
231 236anti-parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
137 138first strand
Strand 2
B
120 124anti-parallel
Strand 3
B
110 117anti-parallel
Strand 4
B
89 97anti-parallel
Strand 5
B
171 177anti-parallel
Strand 6
B
159 165anti-parallel
Strand 7
B
149 156anti-parallel
Strand 8
B
144 146anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
207 212anti-parallel
Strand 3
A
215 220anti-parallel
Strand 4
A
223 228anti-parallel
Strand 5
A
231 236anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
89 99anti-parallel
Strand 3
A
110 117anti-parallel
Strand 4
A
120 124anti-parallel
Strand 5
A
137 138anti-parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
103 104first strand
Strand 2
A
89 99anti-parallel
Strand 3
A
172 177anti-parallel
Strand 4
A
159 165anti-parallel
Strand 5
A
149 156anti-parallel
Strand 6
A
144 146anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il