Analysis of interatomic Contacts of Structural Units in PDB entry:
8K52


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K52 entry

There are 2 chains in PDB entry 8K52 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 HIS 23VAL 859
B
 HIS 23VAL 859
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 61 helices in PDB entry 8K52. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
23 37Right-handed alpha
Helix 2
AA2
A
78 87Right-handed alpha
Helix 3
AA3
A
93 110Right-handed alpha
Helix 4
AA4
A
112 134Right-handed alpha
Helix 5
AA5
A
136 163Right-handed alpha
Helix 6
AA6
A
194 199Right-handed alpha
Helix 7
AA7
A
210 214Right-handed 310
Helix 8
AA8
A
221 227Right-handed alpha
Helix 9
AA9
A
242 262Right-handed alpha
Helix 10
AB1
A
280 282Right-handed 310
Helix 11
AB2
A
297 307Right-handed alpha
Helix 12
AB3
A
311 319Right-handed alpha
Helix 13
AB4
A
357 374Right-handed alpha
Helix 14
AB5
A
390 403Right-handed alpha
Helix 15
AB6
A
423 447Right-handed alpha
Helix 16
AB7
A
467 479Right-handed alpha
Helix 17
AB8
A
480 485Right-handed alpha
Helix 18
AB9
A
485 493Right-handed alpha
Helix 19
AC1
A
495 505Right-handed alpha
Helix 20
AC2
A
528 554Right-handed alpha
Helix 21
AC3
A
554 560Right-handed alpha
Helix 22
AC4
A
564 587Right-handed alpha
Helix 23
AC5
A
587 606Right-handed alpha
Helix 24
AC6
A
619 646Right-handed alpha
Helix 25
AC7
A
652 681Right-handed alpha
Helix 26
AC8
A
684 696Right-handed alpha
Helix 27
AC9
A
696 706Right-handed alpha
Helix 28
AD1
A
708 735Right-handed alpha
Helix 29
AD2
A
764 819Right-handed alpha
Helix 30
AD3
A
820 853Right-handed alpha
Helix 31
AD4
B
24 37Right-handed alpha
Helix 32
AD5
B
78 85Right-handed alpha
Helix 33
AD6
B
93 110Right-handed alpha
Helix 34
AD7
B
112 134Right-handed alpha
Helix 35
AD8
B
136 163Right-handed alpha
Helix 36
AD9
B
194 199Right-handed alpha
Helix 37
AE1
B
210 214Right-handed 310
Helix 38
AE2
B
221 227Right-handed alpha
Helix 39
AE3
B
242 262Right-handed alpha
Helix 40
AE4
B
280 282Right-handed 310
Helix 41
AE5
B
297 307Right-handed alpha
Helix 42
AE6
B
311 319Right-handed alpha
Helix 43
AE7
B
357 374Right-handed alpha
Helix 44
AE8
B
390 403Right-handed alpha
Helix 45
AE9
B
423 447Right-handed alpha
Helix 46
AF1
B
467 479Right-handed alpha
Helix 47
AF2
B
480 485Right-handed alpha
Helix 48
AF3
B
485 493Right-handed alpha
Helix 49
AF4
B
495 505Right-handed alpha
Helix 50
AF5
B
528 553Right-handed alpha
Helix 51
AF6
B
554 560Right-handed alpha
Helix 52
AF7
B
564 587Right-handed alpha
Helix 53
AF8
B
587 606Right-handed alpha
Helix 54
AF9
B
620 646Right-handed alpha
Helix 55
AG1
B
652 680Right-handed alpha
Helix 56
AG2
B
684 696Right-handed alpha
Helix 57
AG3
B
696 706Right-handed alpha
Helix 58
AG4
B
708 720Right-handed alpha
Helix 59
AG5
B
721 735Right-handed alpha
Helix 60
AG6
B
764 819Right-handed alpha
Helix 61
AG7
B
820 853Right-handed alpha
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There are 4 sheets in PDB entry 8K52. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 11 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
177 180first strand
Strand 2
A
200 206anti-parallel
Strand 3
A
326 331anti-parallel
Strand 4
A
346 352anti-parallel
Strand 5
A
284 290parallel
Strand 6
A
232 238parallel
Strand 7
A
377 382parallel
Strand 8
A
458 461anti-parallel
Strand 9
A
405 414anti-parallel
Strand 10
A
512 523parallel
Strand 11
A
386 387anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
336 337first strand
Strand 2
A
340 341anti-parallel
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There are 11 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
177 180first strand
Strand 2
B
200 206anti-parallel
Strand 3
B
326 333anti-parallel
Strand 4
B
345 351anti-parallel
Strand 5
B
284 290parallel
Strand 6
B
232 238parallel
Strand 7
B
377 382parallel
Strand 8
B
458 461anti-parallel
Strand 9
B
405 414anti-parallel
Strand 10
B
512 523parallel
Strand 11
B
386 387anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
336 337first strand
Strand 2
B
340 341anti-parallel
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