Analysis of interatomic Contacts of Structural Units in PDB entry:
8K58

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K58 entry

There are 9 chains in PDB entry 8K58 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	TYR 3	GLU 1342
D	THR 14	GLY 1376
E	ALA 2	ALA 77
A	GLU 7	ASP 236
G	MET 1	ARG 129
B	THR 6	ASP 233
I	G 1	C 29
H	G 1	C 29
J	C 11	A 20

There are110 helices in PDB entry 8K58. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	4	10	Right-handed alpha
Helix 2	AA2	C	28	40	Right-handed alpha
Helix 3	AA3	C	48	57	Right-handed alpha
Helix 4	AA4	C	81	89	Right-handed alpha
Helix 5	AA5	C	206	213	Right-handed alpha
Helix 6	AA6	C	216	225	Right-handed alpha
Helix 7	AA7	C	242	246	Right-handed 310
Helix 8	AA8	C	270	281	Right-handed alpha
Helix 9	AA9	C	288	295	Right-handed alpha
Helix 10	AB1	C	318	329	Right-handed alpha
Helix 11	AB2	C	345	354	Right-handed alpha
Helix 12	AB3	C	358	371	Right-handed alpha
Helix 13	AB4	C	377	391	Right-handed alpha
Helix 14	AB5	C	397	409	Right-handed alpha
Helix 15	AB6	C	421	437	Right-handed alpha
Helix 16	AB7	C	455	482	Right-handed alpha
Helix 17	AB8	C	488	492	Right-handed 310
Helix 18	AB9	C	494	509	Right-handed alpha
Helix 19	AC1	C	519	528	Right-handed alpha
Helix 20	AC2	C	544	549	Right-handed alpha
Helix 21	AC3	C	608	614	Right-handed alpha
Helix 22	AC4	C	662	667	Right-handed alpha
Helix 23	AC5	C	670	674	Right-handed 310
Helix 24	AC6	C	675	688	Right-handed alpha
Helix 25	AC7	C	703	712	Right-handed alpha
Helix 26	AC8	C	738	741	Right-handed 310
Helix 27	AC9	C	820	825	Right-handed alpha
Helix 28	AD1	C	858	864	Right-handed alpha
Helix 29	AD2	C	896	907	Right-handed alpha
Helix 30	AD3	C	942	981	Right-handed alpha
Helix 31	AD4	C	985	992	Right-handed alpha
Helix 32	AD5	C	993	1000	Right-handed 310
Helix 33	AD6	C	1005	1038	Right-handed alpha
Helix 34	AD7	C	1102	1107	Right-handed alpha
Helix 35	AD8	C	1109	1134	Right-handed alpha
Helix 36	AD9	C	1137	1151	Right-handed alpha
Helix 37	AE1	C	1166	1176	Right-handed alpha
Helix 38	AE2	C	1191	1202	Right-handed alpha
Helix 39	AE3	C	1238	1243	Right-handed alpha
Helix 40	AE4	C	1271	1281	Right-handed alpha
Helix 41	AE5	C	1284	1292	Right-handed alpha
Helix 42	AE6	C	1297	1311	Right-handed alpha
Helix 43	AE7	C	1320	1333	Right-handed alpha
Helix 44	AE8	D	26	34	Right-handed alpha
Helix 45	AE9	D	58	63	Right-handed alpha
Helix 46	AF1	D	96	101	Right-handed alpha
Helix 47	AF2	D	114	119	Right-handed alpha
Helix 48	AF3	D	122	129	Right-handed alpha
Helix 49	AF4	D	131	140	Right-handed alpha
Helix 50	AF5	D	161	172	Right-handed alpha
Helix 51	AF6	D	180	192	Right-handed alpha
Helix 52	AF7	D	193	208	Right-handed alpha
Helix 53	AF8	D	210	231	Right-handed alpha
Helix 54	AF9	D	233	238	Right-handed 310
Helix 55	AG1	D	263	285	Right-handed alpha
Helix 56	AG2	D	288	308	Right-handed alpha
Helix 57	AG3	D	326	332	Right-handed alpha
Helix 58	AG4	D	370	377	Right-handed alpha
Helix 59	AG5	D	377	388	Right-handed alpha
Helix 60	AG6	D	393	404	Right-handed alpha
Helix 61	AG7	D	406	418	Right-handed alpha
Helix 62	AG8	D	430	432	Right-handed 310
Helix 63	AG9	D	453	458	Right-handed alpha
Helix 64	AH1	D	473	483	Right-handed alpha
Helix 65	AH2	D	485	490	Right-handed 310
Helix 66	AH3	D	504	515	Right-handed alpha
Helix 67	AH4	D	529	539	Right-handed alpha
Helix 68	AH5	D	573	583	Right-handed alpha
Helix 69	AH6	D	588	592	Right-handed 310
Helix 70	AH7	D	597	612	Right-handed alpha
Helix 71	AH8	D	614	636	Right-handed alpha
Helix 72	AH9	D	649	670	Right-handed alpha
Helix 73	AI1	D	674	703	Right-handed alpha
Helix 74	AI2	D	720	728	Right-handed alpha
Helix 75	AI3	D	733	739	Right-handed alpha
Helix 76	AI4	D	768	805	Right-handed alpha
Helix 77	AI5	D	834	840	Right-handed alpha
Helix 78	AI6	D	865	875	Right-handed alpha
Helix 79	AI7	D	896	900	Right-handed alpha
Helix 80	AI8	D	914	925	Right-handed alpha
Helix 81	AI9	D	926	930	Right-handed 310
Helix 82	AJ1	D	1069	1074	Right-handed alpha
Helix 83	AJ2	D	1137	1147	Right-handed alpha
Helix 84	AJ3	D	1216	1223	Right-handed alpha
Helix 85	AJ4	D	1225	1244	Right-handed alpha
Helix 86	AJ5	D	1249	1261	Right-handed alpha
Helix 87	AJ6	D	1280	1293	Right-handed alpha
Helix 88	AJ7	D	1308	1315	Right-handed alpha
Helix 89	AJ8	D	1318	1326	Right-handed alpha
Helix 90	AJ9	D	1327	1339	Right-handed alpha
Helix 91	AK1	D	1346	1354	Right-handed alpha
Helix 92	AK2	D	1360	1373	Right-handed alpha
Helix 93	AK3	E	6	13	Right-handed alpha
Helix 94	AK4	E	17	32	Right-handed alpha
Helix 95	AK5	E	45	56	Right-handed alpha
Helix 96	AK6	E	60	77	Right-handed alpha
Helix 97	AK7	A	35	50	Right-handed alpha
Helix 98	AK8	A	77	87	Right-handed alpha
Helix 99	AK9	A	113	115	Right-handed 310
Helix 100	AL1	A	212	233	Right-handed alpha
Helix 101	AL2	G	11	15	Right-handed 310
Helix 102	AL3	G	31	39	Right-handed alpha
Helix 103	AL4	G	41	52	Right-handed alpha
Helix 104	AL5	G	54	87	Right-handed alpha
Helix 105	AL6	G	107	128	Right-handed alpha
Helix 106	AL7	B	34	50	Right-handed alpha
Helix 107	AL8	B	77	87	Right-handed alpha
Helix 108	AL9	B	113	115	Right-handed 310
Helix 109	AM1	B	154	162	Right-handed alpha
Helix 110	AM2	B	212	230	Right-handed alpha

There are 50 sheets in PDB entry 8K58. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	105	anti-parallel
Strand 4	C	113	128	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	142	145	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	529	531	parallel
Strand 4	C	572	574	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	160	first strand
Strand 2	C	171	177	anti-parallel
Strand 3	C	184	187	anti-parallel
Strand 4	C	195	198	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	286	first strand
Strand 2	C	238	240	anti-parallel
Strand 3	C	227	231	anti-parallel
Strand 4	C	332	336	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	309	311	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	599	607	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	652	654	anti-parallel
Strand 4	C	616	617	parallel
Strand 5	C	633	637	anti-parallel
Strand 6	C	642	646	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	623	624	first strand
Strand 2	C	628	629	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	748	752	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	722	727	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1068	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	798	804	anti-parallel
Strand 4	C	1096	1098	parallel
Strand 5	C	816	819	anti-parallel
Strand 6	C	1076	1080	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1068	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	1209	1210	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	846	847	first strand
Strand 2	C	829	843	anti-parallel
Strand 3	C	1046	1059	anti-parallel
Strand 4	C	926	935	anti-parallel
Strand 5	C	876	877	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	849	850	first strand
Strand 2	C	886	889	anti-parallel
Strand 3	C	913	915	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	425	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel
Strand 7	D	447	449	anti-parallel
Strand 8	D	350	357	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1341	first strand
Strand 2	D	17	24	anti-parallel
Strand 3	D	1341	1342	anti-parallel

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There are 2 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	48	51	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	111	first strand
Strand 2	D	239	244	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	144	145	first strand
Strand 2	D	159	160	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	316	317	first strand
Strand 2	D	320	323	anti-parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	528	first strand
Strand 2	D	548	558	parallel
Strand 3	D	562	572	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	707	708	first strand
Strand 2	D	713	714	anti-parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	809	811	first strand
Strand 2	D	894	895	parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	825	827	first strand
Strand 2	D	830	833	anti-parallel

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There are 3 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	949	952	first strand
Strand 2	D	1015	1019	anti-parallel
Strand 3	D	1002	1003	anti-parallel

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There are 4 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	991	997	first strand
Strand 2	D	980	985	anti-parallel
Strand 3	D	956	961	anti-parallel
Strand 4	D	1010	1011	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	964	968	first strand
Strand 2	D	972	976	anti-parallel

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There are 5 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1024	1028	first strand
Strand 2	D	1120	1125	anti-parallel
Strand 3	D	1106	1109	anti-parallel
Strand 4	D	1056	1061	anti-parallel
Strand 5	D	1046	1047	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1034	1038	first strand
Strand 2	D	1077	1081	anti-parallel
Strand 3	D	1098	1100	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1156	1157	first strand
Strand 2	D	1208	1209	anti-parallel

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There are 3 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1162	1165	first strand
Strand 2	D	1173	1178	anti-parallel
Strand 3	D	1187	1190	anti-parallel

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There are 3 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1277	1279	first strand
Strand 2	D	1263	1268	anti-parallel
Strand 3	D	1301	1304	anti-parallel

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There are 4 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	18	first strand
Strand 2	A	23	32	anti-parallel
Strand 3	A	198	207	anti-parallel
Strand 4	A	180	190	anti-parallel

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There are 4 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	105	first strand
Strand 2	A	139	153	anti-parallel
Strand 3	A	52	61	anti-parallel
Strand 4	A	170	172	anti-parallel

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There are 3 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	105	first strand
Strand 2	A	139	153	anti-parallel
Strand 3	A	175	177	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	94	first strand
Strand 2	G	97	99	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	19	first strand
Strand 2	B	23	31	anti-parallel
Strand 3	B	198	207	anti-parallel
Strand 4	B	180	190	anti-parallel

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There are 4 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	98	105	first strand
Strand 2	B	139	150	anti-parallel
Strand 3	B	52	60	anti-parallel
Strand 4	B	170	172	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	121	123	anti-parallel

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There are 2 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	129	133	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	175	176	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K58

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K58