Analysis of interatomic Contacts of Structural Units in PDB entry:
8K59

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K59 entry

There are 10 chains in PDB entry 8K59 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
C	TYR 3	GLU 1342
D	THR 14	GLY 1376
E	ALA 2	ALA 77
F	GLU 90	ASP 612
A	GLU 7	ASP 236
B	THR 6	ASP 233
G	MET 1	ARG 129
I	C 3	C 63
H	G 1	G 63
J	A 16	A 20

There are139 helices in PDB entry 8K59. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	C	4	10	Right-handed alpha
Helix 2	AA2	C	28	40	Right-handed alpha
Helix 3	AA3	C	48	57	Right-handed alpha
Helix 4	AA4	C	81	89	Right-handed alpha
Helix 5	AA5	C	206	213	Right-handed alpha
Helix 6	AA6	C	216	225	Right-handed alpha
Helix 7	AA7	C	270	281	Right-handed alpha
Helix 8	AA8	C	288	293	Right-handed alpha
Helix 9	AA9	C	318	329	Right-handed alpha
Helix 10	AB1	C	346	354	Right-handed alpha
Helix 11	AB2	C	358	371	Right-handed alpha
Helix 12	AB3	C	377	390	Right-handed alpha
Helix 13	AB4	C	397	409	Right-handed alpha
Helix 14	AB5	C	421	437	Right-handed alpha
Helix 15	AB6	C	455	482	Right-handed alpha
Helix 16	AB7	C	488	492	Right-handed 310
Helix 17	AB8	C	494	508	Right-handed alpha
Helix 18	AB9	C	519	528	Right-handed alpha
Helix 19	AC1	C	544	549	Right-handed alpha
Helix 20	AC2	C	551	555	Right-handed 310
Helix 21	AC3	C	607	614	Right-handed alpha
Helix 22	AC4	C	662	667	Right-handed alpha
Helix 23	AC5	C	670	674	Right-handed 310
Helix 24	AC6	C	675	687	Right-handed alpha
Helix 25	AC7	C	703	712	Right-handed alpha
Helix 26	AC8	C	738	741	Right-handed 310
Helix 27	AC9	C	820	825	Right-handed alpha
Helix 28	AD1	C	858	864	Right-handed alpha
Helix 29	AD2	C	896	907	Right-handed alpha
Helix 30	AD3	C	942	981	Right-handed alpha
Helix 31	AD4	C	986	991	Right-handed alpha
Helix 32	AD5	C	993	997	Right-handed 310
Helix 33	AD6	C	1005	1038	Right-handed alpha
Helix 34	AD7	C	1081	1085	Right-handed 310
Helix 35	AD8	C	1102	1107	Right-handed alpha
Helix 36	AD9	C	1109	1135	Right-handed alpha
Helix 37	AE1	C	1137	1151	Right-handed alpha
Helix 38	AE2	C	1166	1177	Right-handed alpha
Helix 39	AE3	C	1191	1202	Right-handed alpha
Helix 40	AE4	C	1238	1243	Right-handed alpha
Helix 41	AE5	C	1271	1281	Right-handed alpha
Helix 42	AE6	C	1284	1292	Right-handed alpha
Helix 43	AE7	C	1297	1311	Right-handed alpha
Helix 44	AE8	C	1320	1333	Right-handed alpha
Helix 45	AE9	D	26	33	Right-handed alpha
Helix 46	AF1	D	58	63	Right-handed alpha
Helix 47	AF2	D	94	100	Right-handed 310
Helix 48	AF3	D	114	119	Right-handed alpha
Helix 49	AF4	D	122	128	Right-handed alpha
Helix 50	AF5	D	131	140	Right-handed alpha
Helix 51	AF6	D	161	172	Right-handed alpha
Helix 52	AF7	D	181	192	Right-handed alpha
Helix 53	AF8	D	193	208	Right-handed alpha
Helix 54	AF9	D	210	231	Right-handed alpha
Helix 55	AG1	D	233	236	Right-handed 310
Helix 56	AG2	D	246	250	Right-handed 310
Helix 57	AG3	D	263	285	Right-handed alpha
Helix 58	AG4	D	288	309	Right-handed alpha
Helix 59	AG5	D	326	332	Right-handed alpha
Helix 60	AG6	D	370	377	Right-handed alpha
Helix 61	AG7	D	377	388	Right-handed alpha
Helix 62	AG8	D	393	404	Right-handed alpha
Helix 63	AG9	D	405	419	Right-handed alpha
Helix 64	AH1	D	430	432	Right-handed 310
Helix 65	AH2	D	450	452	Right-handed 310
Helix 66	AH3	D	453	458	Right-handed alpha
Helix 67	AH4	D	473	483	Right-handed alpha
Helix 68	AH5	D	486	490	Right-handed 310
Helix 69	AH6	D	504	515	Right-handed alpha
Helix 70	AH7	D	529	539	Right-handed alpha
Helix 71	AH8	D	574	583	Right-handed alpha
Helix 72	AH9	D	588	592	Right-handed 310
Helix 73	AI1	D	597	612	Right-handed alpha
Helix 74	AI2	D	614	636	Right-handed alpha
Helix 75	AI3	D	649	670	Right-handed alpha
Helix 76	AI4	D	674	703	Right-handed alpha
Helix 77	AI5	D	720	728	Right-handed alpha
Helix 78	AI6	D	733	742	Right-handed alpha
Helix 79	AI7	D	749	753	Right-handed 310
Helix 80	AI8	D	768	804	Right-handed alpha
Helix 81	AI9	D	834	840	Right-handed alpha
Helix 82	AJ1	D	865	875	Right-handed alpha
Helix 83	AJ2	D	896	900	Right-handed alpha
Helix 84	AJ3	D	914	925	Right-handed alpha
Helix 85	AJ4	D	926	930	Right-handed 310
Helix 86	AJ5	D	1136	1147	Right-handed alpha
Helix 87	AJ6	D	1216	1225	Right-handed alpha
Helix 88	AJ7	D	1225	1244	Right-handed alpha
Helix 89	AJ8	D	1249	1261	Right-handed alpha
Helix 90	AJ9	D	1280	1293	Right-handed alpha
Helix 91	AK1	D	1308	1315	Right-handed alpha
Helix 92	AK2	D	1318	1326	Right-handed alpha
Helix 93	AK3	D	1327	1339	Right-handed alpha
Helix 94	AK4	D	1346	1354	Right-handed alpha
Helix 95	AK5	D	1360	1373	Right-handed alpha
Helix 96	AK6	E	6	13	Right-handed alpha
Helix 97	AK7	E	17	32	Right-handed alpha
Helix 98	AK8	E	45	56	Right-handed alpha
Helix 99	AK9	E	60	77	Right-handed alpha
Helix 100	AL1	F	96	108	Right-handed alpha
Helix 101	AL2	F	112	137	Right-handed alpha
Helix 102	AL3	F	137	153	Right-handed alpha
Helix 103	AL4	F	157	160	Right-handed 310
Helix 104	AL5	F	214	234	Right-handed alpha
Helix 105	AL6	F	244	258	Right-handed alpha
Helix 106	AL7	F	262	296	Right-handed alpha
Helix 107	AL8	F	298	307	Right-handed alpha
Helix 108	AL9	F	313	321	Right-handed alpha
Helix 109	AM1	F	324	330	Right-handed alpha
Helix 110	AM2	F	333	352	Right-handed alpha
Helix 111	AM3	F	354	383	Right-handed alpha
Helix 112	AM4	F	383	396	Right-handed alpha
Helix 113	AM5	F	400	419	Right-handed alpha
Helix 114	AM6	F	426	447	Right-handed alpha
Helix 115	AM7	F	453	475	Right-handed alpha
Helix 116	AM8	F	479	487	Right-handed alpha
Helix 117	AM9	F	491	502	Right-handed alpha
Helix 118	AN1	F	518	523	Right-handed 310
Helix 119	AN2	F	530	551	Right-handed alpha
Helix 120	AN3	F	552	564	Right-handed alpha
Helix 121	AN4	F	572	580	Right-handed alpha
Helix 122	AN5	F	584	599	Right-handed alpha
Helix 123	AN6	F	603	609	Right-handed alpha
Helix 124	AN7	A	35	50	Right-handed alpha
Helix 125	AN8	A	77	87	Right-handed alpha
Helix 126	AN9	A	113	115	Right-handed 310
Helix 127	AO1	A	212	233	Right-handed alpha
Helix 128	AO2	B	34	50	Right-handed alpha
Helix 129	AO3	B	77	87	Right-handed alpha
Helix 130	AO4	B	113	115	Right-handed 310
Helix 131	AO5	B	154	161	Right-handed alpha
Helix 132	AO6	B	212	229	Right-handed alpha
Helix 133	AO7	B	230	232	Right-handed 310
Helix 134	AO8	G	11	15	Right-handed 310
Helix 135	AO9	G	31	39	Right-handed alpha
Helix 136	AP1	G	41	52	Right-handed alpha
Helix 137	AP2	G	54	87	Right-handed alpha
Helix 138	AP3	G	102	105	Right-handed 310
Helix 139	AP4	G	107	128	Right-handed alpha

There are 48 sheets in PDB entry 8K59. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	66	75	first strand
Strand 2	C	93	105	anti-parallel
Strand 3	C	113	128	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	142	145	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	529	531	parallel
Strand 4	C	572	575	anti-parallel
Strand 5	C	558	559	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	160	first strand
Strand 2	C	171	177	anti-parallel
Strand 3	C	184	188	anti-parallel
Strand 4	C	194	198	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	286	first strand
Strand 2	C	238	240	anti-parallel
Strand 3	C	227	231	anti-parallel
Strand 4	C	332	336	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	309	311	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	599	606	anti-parallel

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There are 6 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	652	654	anti-parallel
Strand 4	C	616	617	parallel
Strand 5	C	633	637	anti-parallel
Strand 6	C	642	646	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	623	624	first strand
Strand 2	C	628	629	anti-parallel

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There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	748	752	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	722	727	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1068	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	798	804	anti-parallel
Strand 4	C	1096	1098	parallel
Strand 5	C	816	819	anti-parallel
Strand 6	C	1076	1080	parallel

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There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1068	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	1209	1210	anti-parallel

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There are 5 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	846	847	first strand
Strand 2	C	830	843	anti-parallel
Strand 3	C	1046	1058	anti-parallel
Strand 4	C	926	935	anti-parallel
Strand 5	C	876	877	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	849	850	first strand
Strand 2	C	886	889	anti-parallel
Strand 3	C	913	915	anti-parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1246	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	425	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel
Strand 7	D	447	449	anti-parallel
Strand 8	D	350	357	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1340	first strand
Strand 2	D	19	24	anti-parallel
Strand 3	D	1341	1342	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	34	37	first strand
Strand 2	D	102	112	parallel
Strand 3	D	238	244	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	44	45	first strand
Strand 2	D	48	51	anti-parallel

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There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	144	146	anti-parallel
Strand 3	D	178	179	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	261	262	first strand
Strand 2	F	505	506	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	528	first strand
Strand 2	D	547	558	parallel
Strand 3	D	562	573	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	809	811	first strand
Strand 2	D	894	895	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	825	827	first strand
Strand 2	D	830	833	anti-parallel

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There are 3 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	949	951	first strand
Strand 2	D	1016	1019	anti-parallel
Strand 3	D	1002	1003	anti-parallel

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There are 4 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	995	997	first strand
Strand 2	D	980	985	anti-parallel
Strand 3	D	956	961	anti-parallel
Strand 4	D	1010	1011	anti-parallel

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There are 5 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1024	1028	first strand
Strand 2	D	1120	1125	anti-parallel
Strand 3	D	1106	1109	anti-parallel
Strand 4	D	1056	1061	anti-parallel
Strand 5	D	1046	1047	anti-parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1034	1038	first strand
Strand 2	D	1077	1081	anti-parallel
Strand 3	D	1098	1100	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1186	1191	first strand
Strand 2	D	1172	1178	anti-parallel
Strand 3	D	1161	1165	anti-parallel
Strand 4	D	1203	1204	anti-parallel

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There are 3 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1277	1279	first strand
Strand 2	D	1263	1268	anti-parallel
Strand 3	D	1301	1304	anti-parallel

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There are 2 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	162	165	first strand
Strand 2	F	259	261	anti-parallel

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There are 4 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	17	first strand
Strand 2	A	23	32	anti-parallel
Strand 3	A	198	207	anti-parallel
Strand 4	A	180	188	anti-parallel

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There are 4 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	97	105	first strand
Strand 2	A	139	150	anti-parallel
Strand 3	A	52	61	anti-parallel
Strand 4	A	170	172	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	175	176	anti-parallel

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There are 4 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	12	19	first strand
Strand 2	B	23	31	anti-parallel
Strand 3	B	195	207	anti-parallel
Strand 4	B	180	192	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	97	105	first strand
Strand 2	B	139	150	anti-parallel
Strand 3	B	52	59	anti-parallel
Strand 4	B	171	172	anti-parallel

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There are 2 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	92	first strand
Strand 2	B	121	123	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	111	first strand
Strand 2	B	129	133	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	152	153	first strand
Strand 2	B	175	176	anti-parallel

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There are 2 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	91	94	first strand
Strand 2	G	97	100	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K59

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K59