Analysis of interatomic Contacts of Structural Units in PDB entry:
8K5A

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K5A entry

There are 9 chains in PDB entry 8K5A (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLU 7	ASP 236
B	THR 6	ASP 233
C	TYR 3	GLU 1342
D	THR 14	GLY 1376
E	ALA 2	ALA 77
G	MET 1	ARG 129
H	G 1	C 29
I	G 1	C 29
J	C 11	A 20

There are104 helices in PDB entry 8K5A. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	35	50	Right-handed alpha
Helix 2	AA2	A	77	87	Right-handed alpha
Helix 3	AA3	A	157	163	Right-handed alpha
Helix 4	AA4	A	212	233	Right-handed alpha
Helix 5	AA5	B	34	50	Right-handed alpha
Helix 6	AA6	B	77	88	Right-handed alpha
Helix 7	AA7	B	111	115	Right-handed 310
Helix 8	AA8	B	154	162	Right-handed alpha
Helix 9	AA9	B	212	228	Right-handed alpha
Helix 10	AB1	B	229	232	Right-handed 310
Helix 11	AB2	C	4	10	Right-handed alpha
Helix 12	AB3	C	28	40	Right-handed alpha
Helix 13	AB4	C	48	57	Right-handed alpha
Helix 14	AB5	C	81	89	Right-handed alpha
Helix 15	AB6	C	206	213	Right-handed alpha
Helix 16	AB7	C	216	225	Right-handed alpha
Helix 17	AB8	C	270	281	Right-handed alpha
Helix 18	AB9	C	288	295	Right-handed alpha
Helix 19	AC1	C	318	329	Right-handed alpha
Helix 20	AC2	C	345	354	Right-handed alpha
Helix 21	AC3	C	358	371	Right-handed alpha
Helix 22	AC4	C	377	391	Right-handed alpha
Helix 23	AC5	C	397	409	Right-handed alpha
Helix 24	AC6	C	421	437	Right-handed alpha
Helix 25	AC7	C	455	482	Right-handed alpha
Helix 26	AC8	C	494	509	Right-handed alpha
Helix 27	AC9	C	519	527	Right-handed alpha
Helix 28	AD1	C	544	549	Right-handed alpha
Helix 29	AD2	C	608	614	Right-handed alpha
Helix 30	AD3	C	662	667	Right-handed alpha
Helix 31	AD4	C	670	674	Right-handed 310
Helix 32	AD5	C	675	688	Right-handed alpha
Helix 33	AD6	C	704	712	Right-handed alpha
Helix 34	AD7	C	738	741	Right-handed 310
Helix 35	AD8	C	806	810	Right-handed 310
Helix 36	AD9	C	820	825	Right-handed alpha
Helix 37	AE1	C	858	863	Right-handed alpha
Helix 38	AE2	C	896	906	Right-handed alpha
Helix 39	AE3	C	942	981	Right-handed alpha
Helix 40	AE4	C	985	992	Right-handed alpha
Helix 41	AE5	C	994	999	Right-handed 310
Helix 42	AE6	C	1005	1038	Right-handed alpha
Helix 43	AE7	C	1101	1107	Right-handed alpha
Helix 44	AE8	C	1109	1135	Right-handed alpha
Helix 45	AE9	C	1137	1151	Right-handed alpha
Helix 46	AF1	C	1166	1177	Right-handed alpha
Helix 47	AF2	C	1191	1202	Right-handed alpha
Helix 48	AF3	C	1238	1243	Right-handed alpha
Helix 49	AF4	C	1271	1281	Right-handed alpha
Helix 50	AF5	C	1284	1292	Right-handed alpha
Helix 51	AF6	C	1297	1310	Right-handed alpha
Helix 52	AF7	C	1320	1332	Right-handed alpha
Helix 53	AF8	D	26	34	Right-handed alpha
Helix 54	AF9	D	94	101	Right-handed alpha
Helix 55	AG1	D	114	119	Right-handed alpha
Helix 56	AG2	D	122	129	Right-handed alpha
Helix 57	AG3	D	131	140	Right-handed alpha
Helix 58	AG4	D	161	172	Right-handed alpha
Helix 59	AG5	D	181	192	Right-handed alpha
Helix 60	AG6	D	193	208	Right-handed alpha
Helix 61	AG7	D	210	231	Right-handed alpha
Helix 62	AG8	D	233	238	Right-handed alpha
Helix 63	AG9	D	246	250	Right-handed 310
Helix 64	AH1	D	263	285	Right-handed alpha
Helix 65	AH2	D	288	308	Right-handed alpha
Helix 66	AH3	D	326	332	Right-handed alpha
Helix 67	AH4	D	370	377	Right-handed alpha
Helix 68	AH5	D	377	388	Right-handed alpha
Helix 69	AH6	D	393	403	Right-handed alpha
Helix 70	AH7	D	406	416	Right-handed alpha
Helix 71	AH8	D	430	432	Right-handed 310
Helix 72	AH9	D	473	483	Right-handed alpha
Helix 73	AI1	D	504	515	Right-handed alpha
Helix 74	AI2	D	528	538	Right-handed alpha
Helix 75	AI3	D	573	581	Right-handed alpha
Helix 76	AI4	D	597	612	Right-handed alpha
Helix 77	AI5	D	614	636	Right-handed alpha
Helix 78	AI6	D	649	670	Right-handed alpha
Helix 79	AI7	D	674	703	Right-handed alpha
Helix 80	AI8	D	720	728	Right-handed alpha
Helix 81	AI9	D	733	742	Right-handed alpha
Helix 82	AJ1	D	768	805	Right-handed alpha
Helix 83	AJ2	D	834	840	Right-handed alpha
Helix 84	AJ3	D	865	875	Right-handed alpha
Helix 85	AJ4	D	914	925	Right-handed alpha
Helix 86	AJ5	D	926	930	Right-handed 310
Helix 87	AJ6	D	1136	1146	Right-handed alpha
Helix 88	AJ7	D	1216	1225	Right-handed alpha
Helix 89	AJ8	D	1225	1244	Right-handed alpha
Helix 90	AJ9	D	1250	1261	Right-handed alpha
Helix 91	AK1	D	1280	1293	Right-handed alpha
Helix 92	AK2	D	1308	1315	Right-handed alpha
Helix 93	AK3	D	1318	1326	Right-handed alpha
Helix 94	AK4	D	1328	1339	Right-handed alpha
Helix 95	AK5	D	1346	1354	Right-handed alpha
Helix 96	AK6	D	1359	1373	Right-handed alpha
Helix 97	AK7	E	6	13	Right-handed alpha
Helix 98	AK8	E	17	32	Right-handed alpha
Helix 99	AK9	E	45	56	Right-handed alpha
Helix 100	AL1	E	60	77	Right-handed alpha
Helix 101	AL2	G	31	39	Right-handed alpha
Helix 102	AL3	G	41	52	Right-handed alpha
Helix 103	AL4	G	54	87	Right-handed alpha
Helix 104	AL5	G	107	128	Right-handed alpha

There are 52 sheets in PDB entry 8K5A. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	18	first strand
Strand 2	A	23	31	anti-parallel
Strand 3	A	198	207	anti-parallel
Strand 4	A	180	190	anti-parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	115	116	first strand
Strand 2	A	97	105	anti-parallel
Strand 3	A	139	149	anti-parallel
Strand 4	A	53	61	anti-parallel
Strand 5	A	171	172	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	92	first strand
Strand 2	A	121	123	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	108	111	first strand
Strand 2	A	129	133	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	152	153	first strand
Strand 2	A	175	176	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	15	19	first strand
Strand 2	B	23	31	anti-parallel
Strand 3	B	199	207	anti-parallel
Strand 4	B	180	189	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	52	56	first strand
Strand 2	B	139	150	anti-parallel
Strand 3	B	98	105	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	60	first strand
Strand 2	B	170	172	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	91	92	first strand
Strand 2	B	121	122	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	108	110	first strand
Strand 2	B	131	133	anti-parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	1182	1183	parallel
Strand 3	C	700	701	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	59	60	first strand
Strand 2	C	66	75	anti-parallel
Strand 3	C	93	105	anti-parallel
Strand 4	C	113	128	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	136	137	first strand
Strand 2	C	142	145	anti-parallel
Strand 3	C	512	514	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	451	454	first strand
Strand 2	C	147	151	anti-parallel
Strand 3	C	529	531	parallel
Strand 4	C	572	574	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	154	160	first strand
Strand 2	C	171	177	anti-parallel
Strand 3	C	184	187	anti-parallel
Strand 4	C	195	198	anti-parallel
Strand 5	C	204	205	anti-parallel

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There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	284	286	first strand
Strand 2	C	238	240	anti-parallel
Strand 3	C	228	231	anti-parallel
Strand 4	C	332	335	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	255	257	first strand
Strand 2	C	260	263	anti-parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	301	302	first strand
Strand 2	C	309	311	anti-parallel

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There are 3 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	599	607	anti-parallel

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There are 6 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	580	581	first strand
Strand 2	C	587	594	anti-parallel
Strand 3	C	652	654	anti-parallel
Strand 4	C	616	617	parallel
Strand 5	C	633	637	anti-parallel
Strand 6	C	642	646	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	623	624	first strand
Strand 2	C	628	629	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	716	717	first strand
Strand 2	C	782	785	anti-parallel
Strand 3	C	768	769	anti-parallel

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There are 4 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	749	752	first strand
Strand 2	C	731	736	anti-parallel
Strand 3	C	722	727	anti-parallel
Strand 4	C	776	777	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	757	758	first strand
Strand 2	C	764	765	anti-parallel

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There are 2 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	789	790	first strand
Strand 2	C	793	794	anti-parallel

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There are 6 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1068	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	798	804	anti-parallel
Strand 4	C	1096	1098	parallel
Strand 5	C	816	819	anti-parallel
Strand 6	C	1076	1080	parallel

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There are 3 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1066	1068	first strand
Strand 2	C	1225	1234	anti-parallel
Strand 3	C	1209	1210	anti-parallel

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There are 4 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	830	841	first strand
Strand 2	C	1046	1058	anti-parallel
Strand 3	C	925	935	anti-parallel
Strand 4	C	876	878	anti-parallel

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There are 3 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	849	850	first strand
Strand 2	C	886	889	anti-parallel
Strand 3	C	913	915	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	882	884	first strand
Strand 2	C	918	919	anti-parallel

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There are 8 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1244	1245	first strand
Strand 2	D	350	357	anti-parallel
Strand 3	D	465	469	anti-parallel
Strand 4	D	421	424	anti-parallel
Strand 5	D	434	442	anti-parallel
Strand 6	D	365	369	parallel
Strand 7	D	447	449	anti-parallel
Strand 8	D	350	357	parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1268	1269	first strand
Strand 2	D	346	347	anti-parallel

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There are 3 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1335	1338	first strand
Strand 2	D	20	24	anti-parallel
Strand 3	D	1341	1342	anti-parallel

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There are 2 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	103	111	first strand
Strand 2	D	239	244	anti-parallel

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There are 3 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	159	160	first strand
Strand 2	D	144	146	anti-parallel
Strand 3	D	178	179	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	491	492	first strand
Strand 2	D	496	498	anti-parallel

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There are 3 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	526	527	first strand
Strand 2	D	548	558	parallel
Strand 3	D	562	572	anti-parallel

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There are 2 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	706	708	first strand
Strand 2	D	713	715	anti-parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	748	749	first strand
Strand 2	D	753	754	anti-parallel

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There are 2 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	809	811	first strand
Strand 2	D	894	895	parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	820	822	first strand
Strand 2	D	880	882	anti-parallel

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There are 2 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	826	827	first strand
Strand 2	D	830	831	anti-parallel

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There are 2 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	842	843	first strand
Strand 2	D	863	864	anti-parallel

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There are 3 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	949	951	first strand
Strand 2	D	1016	1019	anti-parallel
Strand 3	D	1002	1003	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	957	961	first strand
Strand 2	D	980	985	anti-parallel
Strand 3	D	991	997	anti-parallel

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There are 2 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	965	968	first strand
Strand 2	D	972	975	anti-parallel

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There are 3 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1024	1028	first strand
Strand 2	D	1120	1125	anti-parallel
Strand 3	D	1106	1107	anti-parallel

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There are 3 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1035	1038	first strand
Strand 2	D	1077	1080	anti-parallel
Strand 3	D	1099	1100	anti-parallel

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There are 4 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1188	1190	first strand
Strand 2	D	1173	1178	anti-parallel
Strand 3	D	1161	1165	anti-parallel
Strand 4	D	1203	1204	anti-parallel

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There are 2 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1195	1196	first strand
Strand 2	D	1211	1212	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	1277	1279	first strand
Strand 2	D	1263	1268	anti-parallel
Strand 3	D	1301	1304	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	92	94	first strand
Strand 2	G	97	99	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K5A

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K5A