Analysis of interatomic Contacts of Structural Units in PDB entry:
8K5H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K5H entry

There are 4 chains in PDB entry 8K5H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ALA 27	SER 1144
A	ALA 27	SER 1144
C	ALA 27	SER 1144
H	MET 2	MET 2

There are 66 helices in PDB entry 8K5H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	150	154	Right-handed alpha
Helix 2	AA2	B	291	301	Right-handed alpha
Helix 3	AA3	B	334	340	Right-handed alpha
Helix 4	AA4	B	363	367	Right-handed 310
Helix 5	AA5	B	402	407	Right-handed 310
Helix 6	AA6	B	413	419	Right-handed alpha
Helix 7	AA7	B	499	502	Right-handed 310
Helix 8	AA8	B	616	621	Right-handed alpha
Helix 9	AA9	B	734	740	Right-handed alpha
Helix 10	AB1	B	743	751	Right-handed alpha
Helix 11	AB2	B	755	780	Right-handed alpha
Helix 12	AB3	B	813	823	Right-handed alpha
Helix 13	AB4	B	824	826	Right-handed 310
Helix 14	AB5	B	863	881	Right-handed alpha
Helix 15	AB6	B	882	887	Right-handed 310
Helix 16	AB7	B	894	907	Right-handed alpha
Helix 17	AB8	B	910	916	Right-handed alpha
Helix 18	AB9	B	916	937	Right-handed alpha
Helix 19	AC1	B	942	962	Right-handed alpha
Helix 20	AC2	B	963	965	Right-handed 310
Helix 21	AC3	B	973	981	Right-handed alpha
Helix 22	AC4	B	982	1029	Right-handed alpha
Helix 23	AC5	B	1137	1142	Right-handed alpha
Helix 24	AC6	A	150	153	Right-handed 310
Helix 25	AC7	A	291	301	Right-handed alpha
Helix 26	AC8	A	334	339	Right-handed alpha
Helix 27	AC9	A	362	368	Right-handed alpha
Helix 28	AD1	A	403	408	Right-handed 310
Helix 29	AD2	A	413	419	Right-handed alpha
Helix 30	AD3	A	435	440	Right-handed alpha
Helix 31	AD4	A	734	740	Right-handed alpha
Helix 32	AD5	A	743	751	Right-handed alpha
Helix 33	AD6	A	755	780	Right-handed alpha
Helix 34	AD7	A	799	803	Right-handed 310
Helix 35	AD8	A	813	823	Right-handed alpha
Helix 36	AD9	A	851	853	Right-handed 310
Helix 37	AE1	A	863	881	Right-handed alpha
Helix 38	AE2	A	883	888	Right-handed alpha
Helix 39	AE3	A	894	907	Right-handed alpha
Helix 40	AE4	A	910	937	Right-handed alpha
Helix 41	AE5	A	942	962	Right-handed alpha
Helix 42	AE6	A	963	965	Right-handed 310
Helix 43	AE7	A	973	981	Right-handed alpha
Helix 44	AE8	A	982	1029	Right-handed alpha
Helix 45	AE9	A	1138	1143	Right-handed alpha
Helix 46	AF1	C	291	301	Right-handed alpha
Helix 47	AF2	C	613	617	Right-handed 310
Helix 48	AF3	C	734	740	Right-handed alpha
Helix 49	AF4	C	743	751	Right-handed alpha
Helix 50	AF5	C	755	780	Right-handed alpha
Helix 51	AF6	C	799	803	Right-handed 310
Helix 52	AF7	C	813	824	Right-handed alpha
Helix 53	AF8	C	846	853	Right-handed alpha
Helix 54	AF9	C	863	882	Right-handed alpha
Helix 55	AG1	C	883	888	Right-handed alpha
Helix 56	AG2	C	894	904	Right-handed alpha
Helix 57	AG3	C	905	907	Right-handed 310
Helix 58	AG4	C	910	916	Right-handed alpha
Helix 59	AG5	C	916	937	Right-handed alpha
Helix 60	AG6	C	942	962	Right-handed alpha
Helix 61	AG7	C	963	965	Right-handed 310
Helix 62	AG8	C	973	981	Right-handed alpha
Helix 63	AG9	C	982	1030	Right-handed alpha
Helix 64	AH1	C	1137	1142	Right-handed alpha
Helix 65	AH2	H	87	91	Right-handed 310
Helix 66	AH3	L	51	53	Right-handed 310

There are 55 sheets in PDB entry 8K5H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9, AE1, AE2, AE3, AE4, AE5, AE6, AE7, AE8, AE9, AF1, AF2, AF3, AF4, AF5, AF6, AF7, AF8, AF9, AG1,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	28	30	first strand
Strand 2	B	61	65	anti-parallel
Strand 3	B	262	265	anti-parallel
Strand 4	B	87	92	anti-parallel
Strand 5	B	185	192	anti-parallel
Strand 6	B	195	202	anti-parallel
Strand 7	B	221	226	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	43	first strand
Strand 2	C	562	564	parallel
Strand 3	C	570	572	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	48	55	first strand
Strand 2	B	268	276	anti-parallel
Strand 3	B	282	287	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	82	83	first strand
Strand 2	B	234	239	anti-parallel
Strand 3	B	99	105	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	127	133	first strand
Strand 2	B	155	164	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	308	316	first strand
Strand 2	B	589	596	anti-parallel
Strand 3	B	606	610	anti-parallel
Strand 4	B	645	648	anti-parallel
Strand 5	B	640	641	anti-parallel

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There are 5 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	322	323	first strand
Strand 2	B	536	538	parallel
Strand 3	B	545	551	anti-parallel
Strand 4	B	581	585	anti-parallel
Strand 5	B	572	574	anti-parallel

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There are 5 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	353	355	first strand
Strand 2	B	392	400	anti-parallel
Strand 3	B	504	512	anti-parallel
Strand 4	B	428	432	anti-parallel
Strand 5	B	373	375	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	388	389	first strand
Strand 2	B	521	522	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	449	450	first strand
Strand 2	B	490	491	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	562	563	first strand
Strand 2	A	42	43	parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	651	657	first strand
Strand 2	B	688	694	parallel
Strand 3	B	667	672	anti-parallel
Strand 4	B	661	662	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	698	699	first strand
Strand 2	A	784	785	parallel

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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	708	710	first strand
Strand 2	B	1071	1073	anti-parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	725	first strand
Strand 2	B	1056	1064	anti-parallel
Strand 3	B	1044	1048	anti-parallel

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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	717	725	first strand
Strand 2	B	1056	1064	anti-parallel
Strand 3	B	1051	1053	anti-parallel

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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1117	1119	first strand
Strand 2	B	1084	1087	anti-parallel
Strand 3	B	1078	1079	anti-parallel
Strand 4	B	1130	1131	parallel

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There are 2 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1091	1094	first strand
Strand 2	B	1099	1102	anti-parallel

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There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	28	30	first strand
Strand 2	A	61	67	anti-parallel
Strand 3	A	260	266	anti-parallel
Strand 4	A	87	94	anti-parallel
Strand 5	A	182	192	anti-parallel
Strand 6	A	195	205	anti-parallel
Strand 7	A	221	226	anti-parallel

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There are 3 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	47	50	first strand
Strand 2	A	272	276	anti-parallel
Strand 3	A	282	287	anti-parallel

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There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	55	first strand
Strand 2	A	268	270	anti-parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	82	83	first strand
Strand 2	A	234	239	anti-parallel
Strand 3	A	99	105	anti-parallel

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There are 3 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	124	127	anti-parallel
Strand 3	A	164	167	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	130	133	first strand
Strand 2	A	155	159	anti-parallel

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There are 5 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	308	311	first strand
Strand 2	A	592	596	anti-parallel
Strand 3	A	606	610	anti-parallel
Strand 4	A	645	648	anti-parallel
Strand 5	A	640	641	anti-parallel

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There are 2 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	315	316	first strand
Strand 2	A	589	590	anti-parallel

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There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	351	355	first strand
Strand 2	A	390	399	anti-parallel
Strand 3	A	505	513	anti-parallel
Strand 4	A	430	434	anti-parallel

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There are 2 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	358	359	first strand
Strand 2	A	521	522	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	449	451	first strand
Strand 2	A	489	491	anti-parallel

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There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	470	471	first strand
Strand 2	A	485	486	anti-parallel

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There are 4 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	536	540	first strand
Strand 2	A	543	551	anti-parallel
Strand 3	A	581	585	anti-parallel
Strand 4	A	572	574	anti-parallel

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There are 2 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	670	672	first strand
Strand 2	A	688	690	anti-parallel

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There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	698	699	first strand
Strand 2	C	784	785	parallel

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There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	709	725	first strand
Strand 2	A	1056	1074	anti-parallel
Strand 3	A	1044	1053	anti-parallel

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There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	709	725	first strand
Strand 2	A	1056	1074	anti-parallel
Strand 3	A	1091	1094	anti-parallel
Strand 4	A	1099	1102	anti-parallel

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There are 2 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	731	733	first strand
Strand 2	A	855	857	anti-parallel

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There are 4 strands in AE1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	1117	1119	first strand
Strand 2	A	1084	1087	anti-parallel
Strand 3	A	1078	1079	anti-parallel
Strand 4	A	1130	1131	parallel

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There are 8 strands in AE2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	28	30	first strand
Strand 2	C	61	64	anti-parallel
Strand 3	C	261	266	anti-parallel
Strand 4	C	88	94	anti-parallel
Strand 5	C	182	192	anti-parallel
Strand 6	C	195	205	anti-parallel
Strand 7	C	219	226	anti-parallel
Strand 8	C	36	37	parallel

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There are 2 strands in AE3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	47	55	first strand
Strand 2	C	268	276	anti-parallel

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There are 5 strands in AE4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	164	167	first strand
Strand 2	C	124	127	anti-parallel
Strand 3	C	114	119	anti-parallel
Strand 4	C	99	105	anti-parallel
Strand 5	C	234	239	anti-parallel

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There are 2 strands in AE5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	130	131	first strand
Strand 2	C	158	159	anti-parallel

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There are 5 strands in AE6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	308	312	first strand
Strand 2	C	592	596	anti-parallel
Strand 3	C	606	610	anti-parallel
Strand 4	C	645	648	anti-parallel
Strand 5	C	639	641	anti-parallel

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There are 3 strands in AE7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	539	first strand
Strand 2	C	544	551	anti-parallel
Strand 3	C	582	585	anti-parallel

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There are 4 strands in AE8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	651	652	first strand
Strand 2	C	688	693	parallel
Strand 3	C	667	672	anti-parallel
Strand 4	C	661	664	anti-parallel

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There are 3 strands in AE9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	725	first strand
Strand 2	C	1056	1074	anti-parallel
Strand 3	C	1044	1053	anti-parallel

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There are 4 strands in AF1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	708	725	first strand
Strand 2	C	1056	1074	anti-parallel
Strand 3	C	1091	1094	anti-parallel
Strand 4	C	1099	1102	anti-parallel

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There are 2 strands in AF2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	730	733	first strand
Strand 2	C	855	858	anti-parallel

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There are 4 strands in AF3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	1117	1119	first strand
Strand 2	C	1083	1087	anti-parallel
Strand 3	C	1078	1080	anti-parallel
Strand 4	C	1130	1131	parallel

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There are 6 strands in AF4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	33	39	anti-parallel
Strand 5	H	45	52	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AF5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	116	120	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	111	112	anti-parallel

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There are 3 strands in AF6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	17	22	first strand
Strand 2	H	78	84	anti-parallel
Strand 3	H	71	73	anti-parallel

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There are 2 strands in AF7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	4	6	first strand
Strand 2	L	23	25	anti-parallel

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There are 2 strands in AF8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	10	11	first strand
Strand 2	L	104	105	parallel

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There are 2 strands in AF9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	19	20	first strand
Strand 2	L	75	76	anti-parallel

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There are 4 strands in AG1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	L	54	55	first strand
Strand 2	L	47	50	anti-parallel
Strand 3	L	35	39	anti-parallel
Strand 4	L	86	90	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K5H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K5H