Analysis of interatomic Contacts of Structural Units in PDB entry:
8K5I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K5I entry

There is 1 chain in PDB entry 8K5I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TYR 8PRO 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 15 helices in PDB entry 8K5I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
13 22Right-handed alpha
Helix 2
AA2
A
23 50Right-handed alpha
Helix 3
AA3
A
64 80Right-handed alpha
Helix 4
AA4
A
85 92Right-handed 310
Helix 5
AA5
A
105 111Right-handed alpha
Helix 6
AA6
A
117 122Right-handed 310
Helix 7
AA7
A
127 148Right-handed alpha
Helix 8
AA8
A
154 182Right-handed alpha
Helix 9
AA9
A
220 224Right-handed 310
Helix 10
AB1
A
242 252Right-handed alpha
Helix 11
AB2
A
253 261Right-handed 310
Helix 12
AB3
A
262 271Right-handed alpha
Helix 13
AB4
A
308 320Right-handed alpha
Helix 14
AB5
A
325 336Right-handed alpha
Helix 15
AB6
A
363 371Right-handed 310
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There are 3 sheets in PDB entry 8K5I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
200 203first strand
Strand 2
A
234 237anti-parallel
Strand 3
A
411 412anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
206 210first strand
Strand 2
A
227 231anti-parallel
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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
395 397first strand
Strand 2
A
375 379anti-parallel
Strand 3
A
345 351anti-parallel
Strand 4
A
406 407parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il