Analysis of interatomic Contacts of Structural Units in PDB entry:
8K5X


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K5X entry

There are 2 chains in PDB entry 8K5X (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LEU 39GLY 269
B
 ASN 38GLY 269
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 14 helices in PDB entry 8K5X. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
40 52Right-handed alpha
Helix 2
AA2
A
53 61Right-handed alpha
Helix 3
AA3
A
67 79Right-handed alpha
Helix 4
AA4
A
87 96Right-handed alpha
Helix 5
AA5
A
133 150Right-handed alpha
Helix 6
AA6
A
220 232Right-handed alpha
Helix 7
AA7
A
257 266Right-handed alpha
Helix 8
AA8
B
40 52Right-handed alpha
Helix 9
AA9
B
64 66Right-handed 310
Helix 10
AB1
B
67 79Right-handed alpha
Helix 11
AB2
B
87 96Right-handed alpha
Helix 12
AB3
B
133 150Right-handed alpha
Helix 13
AB4
B
220 232Right-handed alpha
Helix 14
AB5
B
257 269Right-handed alpha
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There are 4 sheets in PDB entry 8K5X. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 5 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
155 158first strand
Strand 2
A
120 125parallel
Strand 3
A
166 171parallel
Strand 4
A
202 205parallel
Strand 5
A
189 191anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
210 211first strand
Strand 2
A
218 219parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
155 158first strand
Strand 2
B
120 125parallel
Strand 3
B
166 171parallel
Strand 4
B
202 205parallel
Strand 5
B
189 191anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
210 211first strand
Strand 2
B
218 219parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il