Analysis of interatomic Contacts of Structural Units in PDB entry:
8K6F

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K6F entry

There are 6 chains in PDB entry 8K6F (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 6	PHE 375
B	ILE 5	PHE 375
C	ILE 24	GLU 370
D	LYS 23	GLU 370
E	MET 1	GLY 76
F	MET 1	GLY 76

There are 82 helices in PDB entry 8K6F. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	71	75	Right-handed 310
Helix 3	AA3	A	78	91	Right-handed alpha
Helix 4	AA4	A	97	101	Right-handed 310
Helix 5	AA5	A	112	127	Right-handed alpha
Helix 6	AA6	A	137	146	Right-handed alpha
Helix 7	AA7	A	181	196	Right-handed alpha
Helix 8	AA8	A	202	215	Right-handed alpha
Helix 9	AA9	A	222	233	Right-handed alpha
Helix 10	AB1	A	252	263	Right-handed alpha
Helix 11	AB2	A	264	268	Right-handed 310
Helix 12	AB3	A	273	283	Right-handed alpha
Helix 13	AB4	A	286	295	Right-handed alpha
Helix 14	AB5	A	308	320	Right-handed alpha
Helix 15	AB6	A	337	348	Right-handed alpha
Helix 16	AB7	A	350	354	Right-handed 310
Helix 17	AB8	A	359	366	Right-handed alpha
Helix 18	AB9	A	368	374	Right-handed alpha
Helix 19	AC1	B	42	46	Right-handed 310
Helix 20	AC2	B	55	61	Right-handed alpha
Helix 21	AC3	B	79	91	Right-handed alpha
Helix 22	AC4	B	97	101	Right-handed 310
Helix 23	AC5	B	112	128	Right-handed alpha
Helix 24	AC6	B	137	146	Right-handed alpha
Helix 25	AC7	B	181	195	Right-handed alpha
Helix 26	AC8	B	202	217	Right-handed alpha
Helix 27	AC9	B	222	233	Right-handed alpha
Helix 28	AD1	B	252	260	Right-handed alpha
Helix 29	AD2	B	261	262	Right-handed 310
Helix 30	AD3	B	263	268	Right-handed 310
Helix 31	AD4	B	273	283	Right-handed alpha
Helix 32	AD5	B	286	295	Right-handed alpha
Helix 33	AD6	B	308	318	Right-handed alpha
Helix 34	AD7	B	334	336	Right-handed 310
Helix 35	AD8	B	337	349	Right-handed alpha
Helix 36	AD9	B	350	355	Right-handed 310
Helix 37	AE1	B	359	366	Right-handed alpha
Helix 38	AE2	B	368	374	Right-handed alpha
Helix 39	AE3	C	26	33	Right-handed alpha
Helix 40	AE4	C	38	55	Right-handed alpha
Helix 41	AE5	C	60	73	Right-handed alpha
Helix 42	AE6	C	75	90	Right-handed alpha
Helix 43	AE7	C	91	94	Right-handed 310
Helix 44	AE8	C	95	106	Right-handed alpha
Helix 45	AE9	C	107	109	Right-handed 310
Helix 46	AF1	C	112	115	Right-handed 310
Helix 47	AF2	C	116	138	Right-handed alpha
Helix 48	AF3	C	140	154	Right-handed alpha
Helix 49	AF4	C	167	176	Right-handed alpha
Helix 50	AF5	C	177	182	Right-handed 310
Helix 51	AF6	C	186	191	Right-handed alpha
Helix 52	AF7	C	195	199	Right-handed 310
Helix 53	AF8	C	246	251	Right-handed alpha
Helix 54	AF9	C	262	278	Right-handed alpha
Helix 55	AG1	C	283	303	Right-handed alpha
Helix 56	AG2	C	306	315	Right-handed alpha
Helix 57	AG3	C	316	326	Right-handed alpha
Helix 58	AG4	C	338	370	Right-handed alpha
Helix 59	AG5	D	24	34	Right-handed alpha
Helix 60	AG6	D	38	55	Right-handed alpha
Helix 61	AG7	D	60	71	Right-handed alpha
Helix 62	AG8	D	75	90	Right-handed alpha
Helix 63	AG9	D	95	106	Right-handed alpha
Helix 64	AH1	D	107	109	Right-handed 310
Helix 65	AH2	D	112	115	Right-handed 310
Helix 66	AH3	D	116	138	Right-handed alpha
Helix 67	AH4	D	140	154	Right-handed alpha
Helix 68	AH5	D	168	176	Right-handed alpha
Helix 69	AH6	D	177	182	Right-handed 310
Helix 70	AH7	D	185	191	Right-handed alpha
Helix 71	AH8	D	195	199	Right-handed 310
Helix 72	AH9	D	246	251	Right-handed alpha
Helix 73	AI1	D	262	278	Right-handed alpha
Helix 74	AI2	D	283	302	Right-handed alpha
Helix 75	AI3	D	310	315	Right-handed alpha
Helix 76	AI4	D	316	325	Right-handed alpha
Helix 77	AI5	D	338	362	Right-handed alpha
Helix 78	AI6	D	363	365	Right-handed 310
Helix 79	AI7	E	22	34	Right-handed alpha
Helix 80	AI8	E	55	60	Right-handed 310
Helix 81	AI9	F	22	35	Right-handed alpha
Helix 82	AJ1	F	55	60	Right-handed 310

There are 14 sheets in PDB entry 8K6F. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	29	32	first strand
Strand 2	A	16	21	anti-parallel
Strand 3	A	8	12	anti-parallel
Strand 4	A	103	107	parallel
Strand 5	A	131	136	parallel
Strand 6	A	357	358	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	301	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	242	first strand
Strand 2	A	246	250	anti-parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	11	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	38	anti-parallel
Strand 3	B	65	68	anti-parallel

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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	176	178	anti-parallel

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There are 5 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	169	170	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	150	155	anti-parallel
Strand 4	B	297	301	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	238	241	first strand
Strand 2	B	247	250	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	207	211	first strand
Strand 2	C	232	236	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	211	first strand
Strand 2	D	232	234	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	16	first strand
Strand 2	E	2	6	anti-parallel
Strand 3	E	66	71	parallel
Strand 4	E	41	45	anti-parallel
Strand 5	E	48	49	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	14	first strand
Strand 2	F	4	6	anti-parallel
Strand 3	F	66	71	parallel
Strand 4	F	41	45	anti-parallel
Strand 5	F	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K6F

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K6F