Analysis of interatomic Contacts of Structural Units in PDB entry:
8K6I

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K6I entry

There are 6 chains in PDB entry 8K6I (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ILE 5	PHE 375
B	ILE 5	PHE 375
C	GLU 25	LYS 369
D	GLN 22	ASN 368
E	GLY -1	GLY 76
F	SER 0	GLY 76

There are 67 helices in PDB entry 8K6I. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	55	61	Right-handed alpha
Helix 2	AA2	A	84	92	Right-handed alpha
Helix 3	AA3	A	112	116	Right-handed 310
Helix 4	AA4	A	117	126	Right-handed alpha
Helix 5	AA5	A	137	144	Right-handed alpha
Helix 6	AA6	A	181	195	Right-handed alpha
Helix 7	AA7	A	205	217	Right-handed alpha
Helix 8	AA8	A	223	233	Right-handed alpha
Helix 9	AA9	A	251	257	Right-handed alpha
Helix 10	AB1	A	276	283	Right-handed alpha
Helix 11	AB2	A	290	295	Right-handed alpha
Helix 12	AB3	A	308	318	Right-handed alpha
Helix 13	AB4	A	339	347	Right-handed alpha
Helix 14	AB5	A	351	356	Right-handed 310
Helix 15	AB6	A	359	366	Right-handed alpha
Helix 16	AB7	A	367	373	Right-handed 310
Helix 17	AB8	B	55	61	Right-handed alpha
Helix 18	AB9	B	81	86	Right-handed alpha
Helix 19	AC1	B	86	91	Right-handed alpha
Helix 20	AC2	B	112	126	Right-handed alpha
Helix 21	AC3	B	137	141	Right-handed alpha
Helix 22	AC4	B	181	195	Right-handed alpha
Helix 23	AC5	B	208	216	Right-handed alpha
Helix 24	AC6	B	222	229	Right-handed alpha
Helix 25	AC7	B	251	257	Right-handed alpha
Helix 26	AC8	B	258	260	Right-handed 310
Helix 27	AC9	B	263	268	Right-handed 310
Helix 28	AD1	B	273	283	Right-handed alpha
Helix 29	AD2	B	290	295	Right-handed alpha
Helix 30	AD3	B	308	319	Right-handed alpha
Helix 31	AD4	B	337	348	Right-handed alpha
Helix 32	AD5	B	359	366	Right-handed alpha
Helix 33	AD6	C	26	34	Right-handed alpha
Helix 34	AD7	C	38	52	Right-handed alpha
Helix 35	AD8	C	63	72	Right-handed alpha
Helix 36	AD9	C	75	90	Right-handed alpha
Helix 37	AE1	C	95	106	Right-handed alpha
Helix 38	AE2	C	117	135	Right-handed alpha
Helix 39	AE3	C	146	154	Right-handed alpha
Helix 40	AE4	C	169	176	Right-handed alpha
Helix 41	AE5	C	186	190	Right-handed 310
Helix 42	AE6	C	246	251	Right-handed alpha
Helix 43	AE7	C	263	279	Right-handed alpha
Helix 44	AE8	C	283	299	Right-handed alpha
Helix 45	AE9	C	306	312	Right-handed alpha
Helix 46	AF1	C	316	325	Right-handed alpha
Helix 47	AF2	C	338	361	Right-handed alpha
Helix 48	AF3	D	38	55	Right-handed alpha
Helix 49	AF4	D	63	73	Right-handed alpha
Helix 50	AF5	D	75	90	Right-handed alpha
Helix 51	AF6	D	97	103	Right-handed alpha
Helix 52	AF7	D	105	109	Right-handed 310
Helix 53	AF8	D	117	126	Right-handed alpha
Helix 54	AF9	D	127	137	Right-handed alpha
Helix 55	AG1	D	141	145	Right-handed 310
Helix 56	AG2	D	148	154	Right-handed alpha
Helix 57	AG3	D	170	176	Right-handed alpha
Helix 58	AG4	D	186	191	Right-handed alpha
Helix 59	AG5	D	266	278	Right-handed alpha
Helix 60	AG6	D	283	301	Right-handed alpha
Helix 61	AG7	D	306	315	Right-handed alpha
Helix 62	AG8	D	316	325	Right-handed alpha
Helix 63	AG9	D	338	343	Right-handed alpha
Helix 64	AH1	D	345	364	Right-handed alpha
Helix 65	AH2	E	22	33	Right-handed alpha
Helix 66	AH3	E	55	59	Right-handed 310
Helix 67	AH4	F	22	33	Right-handed alpha

There are 15 sheets in PDB entry 8K6I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	8	11	first strand
Strand 2	A	18	21	anti-parallel

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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	53	54	first strand
Strand 2	A	35	38	anti-parallel
Strand 3	A	65	68	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	105	107	first strand
Strand 2	A	134	136	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	131	132	first strand
Strand 2	A	357	358	anti-parallel

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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	176	178	anti-parallel

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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	169	170	first strand
Strand 2	A	160	166	anti-parallel
Strand 3	A	150	155	anti-parallel
Strand 4	A	297	300	parallel
Strand 5	A	329	330	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	238	242	first strand
Strand 2	A	246	250	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	29	32	first strand
Strand 2	B	16	21	anti-parallel
Strand 3	B	8	13	anti-parallel
Strand 4	B	103	107	parallel
Strand 5	B	131	136	parallel
Strand 6	B	357	358	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	53	54	first strand
Strand 2	B	35	36	anti-parallel
Strand 3	B	67	68	anti-parallel

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There are 5 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	176	177	first strand
Strand 2	B	160	166	anti-parallel
Strand 3	B	149	155	anti-parallel
Strand 4	B	297	301	parallel
Strand 5	B	329	330	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	239	241	first strand
Strand 2	B	247	249	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	208	211	first strand
Strand 2	C	232	235	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	209	211	first strand
Strand 2	D	232	234	anti-parallel

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There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	12	15	first strand
Strand 2	E	3	6	anti-parallel
Strand 3	E	66	69	parallel
Strand 4	E	43	45	anti-parallel
Strand 5	E	48	49	anti-parallel

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There are 5 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	12	17	first strand
Strand 2	F	1	6	anti-parallel
Strand 3	F	66	71	parallel
Strand 4	F	41	45	anti-parallel
Strand 5	F	48	49	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K6I

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K6I