Analysis of interatomic Contacts of Structural Units in PDB entry:
8K6K


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K6K entry

There are 3 chains in PDB entry 8K6K (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 4LYS 542
B
 ARG 48PHE 183
C
 ILE 40SER 452
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 45 helices in PDB entry 8K6K. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
16 29Right-handed alpha
Helix 2
AA2
A
43 53Right-handed alpha
Helix 3
AA3
A
55 61Right-handed alpha
Helix 4
AA4
A
92 97Right-handed 310
Helix 5
AA5
A
105 111Right-handed 310
Helix 6
AA6
A
119 123Right-handed 310
Helix 7
AA7
A
124 130Right-handed alpha
Helix 8
AA8
A
138 154Right-handed alpha
Helix 9
AA9
A
181 195Right-handed alpha
Helix 10
AB1
A
233 244Right-handed alpha
Helix 11
AB2
A
292 301Right-handed alpha
Helix 12
AB3
A
351 354Right-handed 310
Helix 13
AB4
A
355 360Right-handed 310
Helix 14
AB5
A
373 384Right-handed alpha
Helix 15
AB6
A
388 401Right-handed alpha
Helix 16
AB7
A
440 462Right-handed alpha
Helix 17
AB8
A
488 492Right-handed 310
Helix 18
AB9
A
510 514Right-handed 310
Helix 19
AC1
A
522 542Right-handed alpha
Helix 20
AC2
B
49 63Right-handed alpha
Helix 21
AC3
B
68 83Right-handed alpha
Helix 22
AC4
B
85 101Right-handed alpha
Helix 23
AC5
B
104 112Right-handed alpha
Helix 24
AC6
B
117 131Right-handed alpha
Helix 25
AC7
B
168 172Right-handed 310
Helix 26
AC8
C
41 50Right-handed alpha
Helix 27
AC9
C
51 57Right-handed alpha
Helix 28
AD1
C
95 106Right-handed alpha
Helix 29
AD2
C
119 124Right-handed alpha
Helix 30
AD3
C
127 142Right-handed alpha
Helix 31
AD4
C
163 172Right-handed alpha
Helix 32
AD5
C
185 197Right-handed alpha
Helix 33
AD6
C
201 206Right-handed alpha
Helix 34
AD7
C
215 219Right-handed 310
Helix 35
AD8
C
245 256Right-handed alpha
Helix 36
AD9
C
265 274Right-handed alpha
Helix 37
AE1
C
275 278Right-handed 310
Helix 38
AE2
C
279 292Right-handed alpha
Helix 39
AE3
C
317 324Right-handed 310
Helix 40
AE4
C
334 343Right-handed alpha
Helix 41
AE5
C
365 370Right-handed alpha
Helix 42
AE6
C
373 383Right-handed alpha
Helix 43
AE7
C
408 423Right-handed alpha
Helix 44
AE8
C
431 441Right-handed alpha
Helix 45
AE9
C
445 451Right-handed 310
Back to top of page

There are 9 sheets in PDB entry 8K6K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
33 36parallel
Strand 3
A
7 13parallel
Strand 4
A
277 287parallel
Strand 5
A
265 271anti-parallel
Strand 6
A
253 259anti-parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
247 249first strand
Strand 2
A
33 36parallel
Strand 3
A
7 13parallel
Strand 4
A
277 287parallel
Strand 5
A
506 508parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
87 89first strand
Strand 2
A
432 437parallel
Strand 3
A
421 426anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
156 157first strand
Strand 2
A
175 176parallel
Back to list of sheets
Back to top of page

There are 6 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
198 200first strand
Strand 2
A
347 349anti-parallel
Strand 3
A
364 369anti-parallel
Strand 4
A
402 409anti-parallel
Strand 5
A
326 332anti-parallel
Strand 6
A
465 469anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
319 322first strand
Strand 2
A
480 482anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
70 73first strand
Strand 2
C
76 79anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
223 224first strand
Strand 2
C
229 230anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
387 388first strand
Strand 2
C
391 392anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il