Analysis of interatomic Contacts of Structural Units in PDB entry:
8K6R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K6R entry

There are 3 chains in PDB entry 8K6R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 25GLU 370
C
 MET 1GLY 75
B
 ILE 5PHE 375
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 44 helices in PDB entry 8K6R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
25 32Right-handed alpha
Helix 2
AA2
A
38 55Right-handed alpha
Helix 3
AA3
A
57 59Right-handed 310
Helix 4
AA4
A
60 73Right-handed alpha
Helix 5
AA5
A
75 88Right-handed alpha
Helix 6
AA6
A
90 94Right-handed 310
Helix 7
AA7
A
95 106Right-handed alpha
Helix 8
AA8
A
107 109Right-handed 310
Helix 9
AA9
A
116 138Right-handed alpha
Helix 10
AB1
A
140 154Right-handed alpha
Helix 11
AB2
A
167 176Right-handed alpha
Helix 12
AB3
A
177 182Right-handed 310
Helix 13
AB4
A
186 191Right-handed alpha
Helix 14
AB5
A
195 199Right-handed 310
Helix 15
AB6
A
224 228Right-handed 310
Helix 16
AB7
A
246 251Right-handed alpha
Helix 17
AB8
A
263 278Right-handed alpha
Helix 18
AB9
A
283 302Right-handed alpha
Helix 19
AC1
A
306 315Right-handed alpha
Helix 20
AC2
A
316 326Right-handed alpha
Helix 21
AC3
A
338 367Right-handed alpha
Helix 22
AC4
C
22 34Right-handed alpha
Helix 23
AC5
C
37 39Right-handed 310
Helix 24
AC6
C
56 60Right-handed 310
Helix 25
AC7
B
40 44Right-handed 310
Helix 26
AC8
B
55 61Right-handed alpha
Helix 27
AC9
B
78 92Right-handed alpha
Helix 28
AD1
B
97 101Right-handed 310
Helix 29
AD2
B
112 126Right-handed alpha
Helix 30
AD3
B
137 145Right-handed alpha
Helix 31
AD4
B
181 197Right-handed alpha
Helix 32
AD5
B
202 217Right-handed alpha
Helix 33
AD6
B
222 233Right-handed alpha
Helix 34
AD7
B
252 257Right-handed alpha
Helix 35
AD8
B
258 262Right-handed 310
Helix 36
AD9
B
263 268Right-handed 310
Helix 37
AE1
B
273 284Right-handed alpha
Helix 38
AE2
B
286 295Right-handed alpha
Helix 39
AE3
B
308 321Right-handed alpha
Helix 40
AE4
B
334 336Right-handed 310
Helix 41
AE5
B
337 348Right-handed alpha
Helix 42
AE6
B
349 356Right-handed 310
Helix 43
AE7
B
359 366Right-handed alpha
Helix 44
AE8
B
368 374Right-handed alpha
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There are 7 sheets in PDB entry 8K6R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
208 211first strand
Strand 2
A
232 235anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
12 16first strand
Strand 2
C
2 7anti-parallel
Strand 3
C
66 71parallel
Strand 4
C
41 45anti-parallel
Strand 5
C
48 49anti-parallel
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There are 6 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
29 32first strand
Strand 2
B
16 21anti-parallel
Strand 3
B
8 11anti-parallel
Strand 4
B
103 107parallel
Strand 5
B
131 136parallel
Strand 6
B
357 358anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
53 54first strand
Strand 2
B
35 38anti-parallel
Strand 3
B
65 68anti-parallel
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There are 3 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
160 166anti-parallel
Strand 3
B
176 178anti-parallel
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There are 5 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
169 170first strand
Strand 2
B
160 166anti-parallel
Strand 3
B
150 155anti-parallel
Strand 4
B
297 300parallel
Strand 5
B
329 330parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
238 241first strand
Strand 2
B
247 250anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il