Analysis of interatomic Contacts of Structural Units in PDB entry:
8K7P


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K7P entry

There are 2 chains in PDB entry 8K7P (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLN 4GLU 385
B
 GLN 4GLU 385
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 41 helices in PDB entry 8K7P. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
21 25Right-handed 310
Helix 2
AA2
A
39 47Right-handed alpha
Helix 3
AA3
A
61 75Right-handed alpha
Helix 4
AA4
A
81 89Right-handed alpha
Helix 5
AA5
A
116 132Right-handed alpha
Helix 6
AA6
A
133 144Right-handed alpha
Helix 7
AA7
A
148 152Right-handed 310
Helix 8
AA8
A
172 177Right-handed alpha
Helix 9
AA9
A
181 195Right-handed alpha
Helix 10
AB1
A
206 210Right-handed 310
Helix 11
AB2
A
218 227Right-handed alpha
Helix 12
AB3
A
228 234Right-handed 310
Helix 13
AB4
A
237 242Right-handed alpha
Helix 14
AB5
A
243 253Right-handed alpha
Helix 15
AB6
A
274 276Right-handed 310
Helix 16
AB7
A
285 287Right-handed 310
Helix 17
AB8
A
288 297Right-handed alpha
Helix 18
AB9
A
300 304Right-handed 310
Helix 19
AC1
A
311 316Right-handed alpha
Helix 20
AC2
A
350 354Right-handed 310
Helix 21
AC3
A
363 384Right-handed alpha
Helix 22
AC4
B
21 25Right-handed 310
Helix 23
AC5
B
39 47Right-handed alpha
Helix 24
AC6
B
61 75Right-handed alpha
Helix 25
AC7
B
81 89Right-handed alpha
Helix 26
AC8
B
116 132Right-handed alpha
Helix 27
AC9
B
133 144Right-handed alpha
Helix 28
AD1
B
148 152Right-handed 310
Helix 29
AD2
B
172 177Right-handed alpha
Helix 30
AD3
B
181 195Right-handed alpha
Helix 31
AD4
B
206 210Right-handed 310
Helix 32
AD5
B
218 227Right-handed alpha
Helix 33
AD6
B
228 234Right-handed 310
Helix 34
AD7
B
237 242Right-handed alpha
Helix 35
AD8
B
243 253Right-handed alpha
Helix 36
AD9
B
285 287Right-handed 310
Helix 37
AE1
B
288 297Right-handed alpha
Helix 38
AE2
B
300 304Right-handed 310
Helix 39
AE3
B
311 316Right-handed alpha
Helix 40
AE4
B
350 354Right-handed 310
Helix 41
AE5
B
363 384Right-handed alpha
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There are 8 sheets in PDB entry 8K7P. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
51 53first strand
Strand 2
A
11 14parallel
Strand 3
A
110 115parallel
Strand 4
A
159 165parallel
Strand 5
A
261 265parallel
Strand 6
A
338 340parallel
Strand 7
A
323 325parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
76 79first strand
Strand 2
A
93 97anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
267 268first strand
Strand 2
A
344 345parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
270 272first strand
Strand 2
A
278 280anti-parallel
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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
51 53first strand
Strand 2
B
11 14parallel
Strand 3
B
110 115parallel
Strand 4
B
159 165parallel
Strand 5
B
261 265parallel
Strand 6
B
338 340parallel
Strand 7
B
323 325parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
76 79first strand
Strand 2
B
93 97anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
267 268first strand
Strand 2
B
344 345parallel
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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
270 272first strand
Strand 2
B
278 280anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il