Analysis of interatomic Contacts of Structural Units in PDB entry:
8K7R


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K7R entry

There are 3 chains in PDB entry 8K7R (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 LYS 29TRP 203
E
 THR 113ASN 425
F
 PRO 111ASN 425
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 10 helices in PDB entry 8K7R. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
84 88Right-handed 310
Helix 2
AA2
E
213 217Right-handed 310
Helix 3
AA3
E
225 231Right-handed alpha
Helix 4
AA4
E
287 294Right-handed alpha
Helix 5
AA5
E
367 369Right-handed 310
Helix 6
AA6
E
393 399Right-handed alpha
Helix 7
AA7
F
181 187Right-handed alpha
Helix 8
AA8
F
225 231Right-handed alpha
Helix 9
AA9
F
287 294Right-handed alpha
Helix 10
AB1
F
394 399Right-handed alpha
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There are 19 sheets in PDB entry 8K7R. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
32 35first strand
Strand 2
A
46 51anti-parallel
Strand 3
A
77 81anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
41 42first strand
Strand 2
A
108 109parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
64 65first strand
Strand 2
A
89 93anti-parallel
Strand 3
A
104 106anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
113 117first strand
Strand 2
A
128 134anti-parallel
Strand 3
A
161 163anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 155first strand
Strand 2
A
141 147anti-parallel
Strand 3
A
176 180anti-parallel
Strand 4
A
183 186anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
172 174first strand
Strand 2
A
190 192anti-parallel
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There are 6 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
178 179first strand
Strand 2
E
132 137anti-parallel
Strand 3
E
114 119anti-parallel
Strand 4
F
113 118anti-parallel
Strand 5
F
131 138anti-parallel
Strand 6
F
173 180anti-parallel
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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
157 161first strand
Strand 2
E
145 151anti-parallel
Strand 3
E
191 197anti-parallel
Strand 4
E
200 206anti-parallel
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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
218 221first strand
Strand 2
E
236 244anti-parallel
Strand 3
E
278 285anti-parallel
Strand 4
E
267 271anti-parallel
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There are 3 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
253 257first strand
Strand 2
E
296 301anti-parallel
Strand 3
E
310 315anti-parallel
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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
325 330first strand
Strand 2
E
341 348anti-parallel
Strand 3
E
384 392anti-parallel
Strand 4
E
371 373anti-parallel
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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
325 330first strand
Strand 2
E
341 348anti-parallel
Strand 3
E
384 392anti-parallel
Strand 4
E
377 378anti-parallel
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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
364 365first strand
Strand 2
E
356 361anti-parallel
Strand 3
E
403 408anti-parallel
Strand 4
E
417 422anti-parallel
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There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
146 151first strand
Strand 2
F
191 196anti-parallel
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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
218 222first strand
Strand 2
F
236 242anti-parallel
Strand 3
F
278 285anti-parallel
Strand 4
F
267 272anti-parallel
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There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
252 257first strand
Strand 2
F
297 302anti-parallel
Strand 3
F
310 314anti-parallel
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There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
325 330first strand
Strand 2
F
340 350anti-parallel
Strand 3
F
384 393anti-parallel
Strand 4
F
371 373anti-parallel
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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
325 330first strand
Strand 2
F
340 350anti-parallel
Strand 3
F
384 393anti-parallel
Strand 4
F
377 378anti-parallel
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There are 4 strands in AC1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
364 365first strand
Strand 2
F
355 361anti-parallel
Strand 3
F
403 409anti-parallel
Strand 4
F
418 422anti-parallel
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