Analysis of interatomic Contacts of Structural Units in PDB entry:
8K7S


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K7S entry

There are 3 chains in PDB entry 8K7S (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
F
 ASP 98LEU 413
A
 LYS 29ILE 195
E
 ASP 98GLY 414
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 10 helices in PDB entry 8K7S. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
F
168 173Right-handed alpha
Helix 2
AA2
F
212 218Right-handed alpha
Helix 3
AA3
F
273 280Right-handed alpha
Helix 4
AA4
F
380 386Right-handed alpha
Helix 5
AA5
A
84 88Right-handed 310
Helix 6
AA6
A
134 138Right-handed 310
Helix 7
AA7
A
167 171Right-handed 310
Helix 8
AA8
E
169 173Right-handed alpha
Helix 9
AA9
E
273 279Right-handed alpha
Helix 10
AB1
E
352 356Right-handed 310
Back to top of page

There are 17 sheets in PDB entry 8K7S. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
150 154first strand
Strand 2
F
159 167anti-parallel
Strand 3
F
117 124anti-parallel
Strand 4
F
100 106anti-parallel
Strand 5
E
100 105anti-parallel
Strand 6
E
116 124anti-parallel
Strand 7
E
158 168anti-parallel
Strand 8
E
147 155anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
132 136first strand
Strand 2
F
178 184anti-parallel
Strand 3
F
187 193anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
205 209first strand
Strand 2
F
223 231anti-parallel
Strand 3
F
264 271anti-parallel
Strand 4
F
255 258anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
238 242first strand
Strand 2
F
283 288anti-parallel
Strand 3
F
296 300anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
311 315first strand
Strand 2
F
328 333anti-parallel
Strand 3
F
373 377anti-parallel
Strand 4
F
356 357anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
F
349 350first strand
Strand 2
F
341 346anti-parallel
Strand 3
F
390 395anti-parallel
Strand 4
F
405 409anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
31 34first strand
Strand 2
A
47 52anti-parallel
Strand 3
A
77 80anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
69 70first strand
Strand 2
A
63 66anti-parallel
Strand 3
A
89 94anti-parallel
Strand 4
A
104 106anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
116 117first strand
Strand 2
A
128 131anti-parallel
Strand 3
A
161 163anti-parallel
Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
121 122first strand
Strand 2
A
193 194parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
150 157first strand
Strand 2
A
141 147anti-parallel
Strand 3
A
174 180anti-parallel
Strand 4
A
183 186anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
133 137first strand
Strand 2
E
178 184anti-parallel
Strand 3
E
187 192anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
205 209first strand
Strand 2
E
223 231anti-parallel
Strand 3
E
264 271anti-parallel
Strand 4
E
253 258anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
238 244first strand
Strand 2
E
282 288anti-parallel
Strand 3
E
296 300anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
311 315first strand
Strand 2
E
325 335anti-parallel
Strand 3
E
371 380anti-parallel
Strand 4
E
357 358anti-parallel
Back to list of sheets
Back to top of page

There are 4 strands in AB7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
311 315first strand
Strand 2
E
325 335anti-parallel
Strand 3
E
371 380anti-parallel
Strand 4
E
362 363anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AB8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
340 344first strand
Strand 2
E
391 396anti-parallel
Strand 3
E
405 408anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il