Analysis of interatomic Contacts of Structural Units in PDB entry:
8K7V

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K7V entry

There are 4 chains in PDB entry 8K7V (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	VAL 761
B	ALA 2	VAL 761
C	ALA 2	VAL 761
D	ALA 2	VAL 761

There are 64 helices in PDB entry 8K7V. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	46	50	Right-handed 310
Helix 2	AA2	A	305	320	Right-handed alpha
Helix 3	AA3	A	346	352	Right-handed alpha
Helix 4	AA4	A	352	357	Right-handed alpha
Helix 5	AA5	A	394	407	Right-handed alpha
Helix 6	AA6	A	423	429	Right-handed alpha
Helix 7	AA7	A	430	433	Right-handed 310
Helix 8	AA8	A	454	472	Right-handed alpha
Helix 9	AA9	A	500	520	Right-handed alpha
Helix 10	AB1	A	536	541	Right-handed alpha
Helix 11	AB2	A	553	565	Right-handed alpha
Helix 12	AB3	A	590	599	Right-handed alpha
Helix 13	AB4	A	618	636	Right-handed alpha
Helix 14	AB5	A	728	735	Right-handed alpha
Helix 15	AB6	A	742	747	Right-handed alpha
Helix 16	AB7	B	46	50	Right-handed 310
Helix 17	AB8	B	306	321	Right-handed alpha
Helix 18	AB9	B	337	342	Right-handed alpha
Helix 19	AC1	B	346	357	Right-handed alpha
Helix 20	AC2	B	395	407	Right-handed alpha
Helix 21	AC3	B	423	429	Right-handed alpha
Helix 22	AC4	B	430	433	Right-handed 310
Helix 23	AC5	B	454	472	Right-handed alpha
Helix 24	AC6	B	496	499	Right-handed 310
Helix 25	AC7	B	500	520	Right-handed alpha
Helix 26	AC8	B	538	542	Right-handed 310
Helix 27	AC9	B	553	565	Right-handed alpha
Helix 28	AD1	B	590	599	Right-handed alpha
Helix 29	AD2	B	613	636	Right-handed alpha
Helix 30	AD3	B	706	712	Right-handed alpha
Helix 31	AD4	B	729	734	Right-handed alpha
Helix 32	AD5	C	46	50	Right-handed 310
Helix 33	AD6	C	69	73	Right-handed 310
Helix 34	AD7	C	305	320	Right-handed alpha
Helix 35	AD8	C	323	327	Right-handed 310
Helix 36	AD9	C	346	357	Right-handed alpha
Helix 37	AE1	C	394	407	Right-handed alpha
Helix 38	AE2	C	423	429	Right-handed alpha
Helix 39	AE3	C	430	433	Right-handed 310
Helix 40	AE4	C	454	463	Right-handed alpha
Helix 41	AE5	C	465	472	Right-handed alpha
Helix 42	AE6	C	500	520	Right-handed alpha
Helix 43	AE7	C	536	541	Right-handed alpha
Helix 44	AE8	C	556	565	Right-handed alpha
Helix 45	AE9	C	590	599	Right-handed alpha
Helix 46	AF1	C	608	612	Right-handed 310
Helix 47	AF2	C	613	636	Right-handed alpha
Helix 48	AF3	C	728	735	Right-handed alpha
Helix 49	AF4	D	46	50	Right-handed 310
Helix 50	AF5	D	305	320	Right-handed alpha
Helix 51	AF6	D	323	327	Right-handed 310
Helix 52	AF7	D	346	357	Right-handed alpha
Helix 53	AF8	D	394	407	Right-handed alpha
Helix 54	AF9	D	423	429	Right-handed alpha
Helix 55	AG1	D	454	472	Right-handed alpha
Helix 56	AG2	D	494	499	Right-handed 310
Helix 57	AG3	D	500	520	Right-handed alpha
Helix 58	AG4	D	536	543	Right-handed alpha
Helix 59	AG5	D	556	565	Right-handed alpha
Helix 60	AG6	D	569	571	Right-handed 310
Helix 61	AG7	D	590	600	Right-handed alpha
Helix 62	AG8	D	608	612	Right-handed 310
Helix 63	AG9	D	613	636	Right-handed alpha
Helix 64	AH1	D	728	735	Right-handed alpha

There are 31 sheets in PDB entry 8K7V. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	3	4	first strand
Strand 2	A	11	15	anti-parallel
Strand 3	A	19	25	anti-parallel
Strand 4	A	31	38	anti-parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	90	93	first strand
Strand 2	A	174	186	anti-parallel
Strand 3	A	271	277	anti-parallel
Strand 4	A	259	265	anti-parallel
Strand 5	A	214	220	anti-parallel
Strand 6	C	214	219	anti-parallel
Strand 7	C	259	265	anti-parallel
Strand 8	C	271	277	anti-parallel
Strand 9	C	174	186	anti-parallel
Strand 10	C	90	93	anti-parallel

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There are 10 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	284	286	first strand
Strand 2	A	174	186	anti-parallel
Strand 3	A	271	277	anti-parallel
Strand 4	A	259	265	anti-parallel
Strand 5	A	214	220	anti-parallel
Strand 6	C	214	219	anti-parallel
Strand 7	C	259	265	anti-parallel
Strand 8	C	271	277	anti-parallel
Strand 9	C	174	186	anti-parallel
Strand 10	C	284	286	anti-parallel

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There are 9 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	112	first strand
Strand 2	A	131	140	anti-parallel
Strand 3	A	145	154	anti-parallel
Strand 4	A	159	168	anti-parallel
Strand 5	A	296	302	anti-parallel
Strand 6	A	248	254	anti-parallel
Strand 7	A	233	237	anti-parallel
Strand 8	A	192	199	anti-parallel
Strand 9	A	202	210	anti-parallel

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There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	104	112	first strand
Strand 2	A	131	140	anti-parallel
Strand 3	A	145	154	anti-parallel
Strand 4	A	159	168	anti-parallel
Strand 5	A	290	293	anti-parallel

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There are 7 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	545	546	first strand
Strand 2	A	524	527	parallel
Strand 3	A	476	479	parallel
Strand 4	A	410	414	parallel
Strand 5	A	364	366	parallel
Strand 6	A	334	336	parallel
Strand 7	A	604	605	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	418	420	first strand
Strand 2	A	447	449	anti-parallel

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There are 6 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	639	644	first strand
Strand 2	A	651	657	anti-parallel
Strand 3	A	663	670	anti-parallel
Strand 4	A	752	759	anti-parallel
Strand 5	A	694	697	anti-parallel
Strand 6	A	725	726	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	3	4	first strand
Strand 2	B	11	15	anti-parallel
Strand 3	B	19	25	anti-parallel
Strand 4	B	31	38	anti-parallel

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There are 10 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	90	93	first strand
Strand 2	B	174	185	anti-parallel
Strand 3	B	271	276	anti-parallel
Strand 4	B	260	265	anti-parallel
Strand 5	B	214	219	anti-parallel
Strand 6	D	214	219	anti-parallel
Strand 7	D	260	265	anti-parallel
Strand 8	D	271	276	anti-parallel
Strand 9	D	174	186	anti-parallel
Strand 10	D	90	93	anti-parallel

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There are 10 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	284	286	first strand
Strand 2	B	174	185	anti-parallel
Strand 3	B	271	276	anti-parallel
Strand 4	B	260	265	anti-parallel
Strand 5	B	214	219	anti-parallel
Strand 6	D	214	219	anti-parallel
Strand 7	D	260	265	anti-parallel
Strand 8	D	271	276	anti-parallel
Strand 9	D	174	186	anti-parallel
Strand 10	D	284	286	anti-parallel

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There are 9 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	112	first strand
Strand 2	B	131	139	anti-parallel
Strand 3	B	145	154	anti-parallel
Strand 4	B	159	168	anti-parallel
Strand 5	B	296	302	anti-parallel
Strand 6	B	248	254	anti-parallel
Strand 7	B	233	237	anti-parallel
Strand 8	B	192	199	anti-parallel
Strand 9	B	202	210	anti-parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	104	112	first strand
Strand 2	B	131	139	anti-parallel
Strand 3	B	145	154	anti-parallel
Strand 4	B	159	168	anti-parallel
Strand 5	B	291	293	anti-parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	573	574	first strand
Strand 2	B	545	547	parallel
Strand 3	B	524	528	parallel
Strand 4	B	476	480	parallel
Strand 5	B	410	414	parallel
Strand 6	B	365	366	parallel
Strand 7	B	334	336	parallel
Strand 8	B	604	605	parallel

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There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	418	419	first strand
Strand 2	B	448	449	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	639	644	first strand
Strand 2	B	651	657	anti-parallel
Strand 3	B	663	670	anti-parallel
Strand 4	B	753	759	anti-parallel
Strand 5	B	692	696	anti-parallel
Strand 6	B	725	728	anti-parallel

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There are 2 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	680	682	first strand
Strand 2	B	737	739	anti-parallel

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There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	3	4	first strand
Strand 2	C	11	15	anti-parallel
Strand 3	C	19	25	anti-parallel
Strand 4	C	31	38	anti-parallel

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There are 9 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	111	first strand
Strand 2	C	131	140	anti-parallel
Strand 3	C	145	154	anti-parallel
Strand 4	C	159	168	anti-parallel
Strand 5	C	296	302	anti-parallel
Strand 6	C	248	254	anti-parallel
Strand 7	C	233	237	anti-parallel
Strand 8	C	192	199	anti-parallel
Strand 9	C	202	210	anti-parallel

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There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	104	111	first strand
Strand 2	C	131	140	anti-parallel
Strand 3	C	145	154	anti-parallel
Strand 4	C	159	168	anti-parallel
Strand 5	C	291	293	anti-parallel

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There are 8 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	545	546	first strand
Strand 2	C	524	528	parallel
Strand 3	C	476	480	parallel
Strand 4	C	410	414	parallel
Strand 5	C	364	366	parallel
Strand 6	C	334	335	parallel
Strand 7	C	602	605	parallel
Strand 8	C	574	577	parallel

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There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	418	419	first strand
Strand 2	C	448	449	anti-parallel

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There are 6 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	639	644	first strand
Strand 2	C	651	657	anti-parallel
Strand 3	C	663	670	anti-parallel
Strand 4	C	752	759	anti-parallel
Strand 5	C	694	697	anti-parallel
Strand 6	C	723	726	anti-parallel

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There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	680	682	first strand
Strand 2	C	737	739	anti-parallel

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There are 4 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	3	4	first strand
Strand 2	D	11	15	anti-parallel
Strand 3	D	19	25	anti-parallel
Strand 4	D	31	38	anti-parallel

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There are 9 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	112	first strand
Strand 2	D	131	140	anti-parallel
Strand 3	D	145	154	anti-parallel
Strand 4	D	159	168	anti-parallel
Strand 5	D	296	302	anti-parallel
Strand 6	D	248	254	anti-parallel
Strand 7	D	233	237	anti-parallel
Strand 8	D	192	199	anti-parallel
Strand 9	D	202	210	anti-parallel

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There are 5 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	104	112	first strand
Strand 2	D	131	140	anti-parallel
Strand 3	D	145	154	anti-parallel
Strand 4	D	159	168	anti-parallel
Strand 5	D	291	293	anti-parallel

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There are 8 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	573	574	first strand
Strand 2	D	545	547	parallel
Strand 3	D	524	528	parallel
Strand 4	D	476	480	parallel
Strand 5	D	410	414	parallel
Strand 6	D	365	366	parallel
Strand 7	D	334	336	parallel
Strand 8	D	604	605	parallel

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There are 2 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	418	420	first strand
Strand 2	D	447	449	anti-parallel

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There are 6 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	639	644	first strand
Strand 2	D	651	657	anti-parallel
Strand 3	D	663	670	anti-parallel
Strand 4	D	753	759	anti-parallel
Strand 5	D	694	697	anti-parallel
Strand 6	D	724	726	anti-parallel

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There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	680	682	first strand
Strand 2	D	737	739	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K7V

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K7V