Analysis of interatomic Contacts of Structural Units in PDB entry:
8K8L


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K8L entry

There is 1 chain in PDB entry 8K8L (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLY 27ARG 257
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 12 helices in PDB entry 8K8L. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
37 53Right-handed alpha
Helix 2
AA2
A
62 72Right-handed alpha
Helix 3
AA3
A
83 93Right-handed alpha
Helix 4
AA4
A
97 101Right-handed 310
Helix 5
AA5
A
129 135Right-handed alpha
Helix 6
AA6
A
147 160Right-handed alpha
Helix 7
AA7
A
162 167Right-handed alpha
Helix 8
AA8
A
175 185Right-handed alpha
Helix 9
AA9
A
195 201Right-handed alpha
Helix 10
AB1
A
211 215Right-handed 310
Helix 11
AB2
A
230 240Right-handed alpha
Helix 12
AB3
A
242 252Right-handed alpha
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There are 2 sheets in PDB entry 8K8L. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
55 61first strand
Strand 2
A
28 34parallel
Strand 3
A
78 80parallel
Strand 4
A
218 224anti-parallel
Strand 5
A
102 107anti-parallel
Strand 6
A
255 256anti-parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
170 173first strand
Strand 2
A
139 142parallel
Strand 3
A
190 194parallel
Strand 4
A
109 114anti-parallel
Strand 5
A
204 209anti-parallel
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