Analysis of interatomic Contacts of Structural Units in PDB entry:
8K98


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K98 entry

There are 4 chains in PDB entry 8K98 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 VAL 4GLU 236
C
 LYS 304ILE 1005
D
 ILE 5GLU 236
B
 LYS 304ILE 1005
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 86 helices in PDB entry 8K98. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
304 306Right-handed 310
Helix 2
AA2
C
307 317Right-handed alpha
Helix 3
AA3
C
318 322Right-handed 310
Helix 4
AA4
C
326 330Right-handed 310
Helix 5
AA5
C
356 366Right-handed alpha
Helix 6
AA6
C
368 373Right-handed 310
Helix 7
AA7
C
374 392Right-handed alpha
Helix 8
AA8
C
411 416Right-handed alpha
Helix 9
AA9
C
417 427Right-handed alpha
Helix 10
AB1
C
431 445Right-handed alpha
Helix 11
AB2
C
447 465Right-handed alpha
Helix 12
AB3
C
467 495Right-handed alpha
Helix 13
AB4
C
495 500Right-handed alpha
Helix 14
AB5
C
508 520Right-handed alpha
Helix 15
AB6
C
532 539Right-handed alpha
Helix 16
AB7
C
540 546Right-handed 310
Helix 17
AB8
C
552 572Right-handed alpha
Helix 18
AB9
C
579 598Right-handed alpha
Helix 19
AC1
C
605 628Right-handed alpha
Helix 20
AC2
C
632 639Right-handed alpha
Helix 21
AC3
C
648 659Right-handed alpha
Helix 22
AC4
C
660 671Right-handed alpha
Helix 23
AC5
C
672 676Right-handed 310
Helix 24
AC6
C
680 700Right-handed alpha
Helix 25
AC7
C
705 723Right-handed alpha
Helix 26
AC8
C
724 726Right-handed 310
Helix 27
AC9
C
729 743Right-handed alpha
Helix 28
AD1
C
750 761Right-handed alpha
Helix 29
AD2
C
768 786Right-handed alpha
Helix 30
AD3
C
803 812Right-handed alpha
Helix 31
AD4
C
819 825Right-handed alpha
Helix 32
AD5
C
834 841Right-handed alpha
Helix 33
AD6
C
842 845Right-handed 310
Helix 34
AD7
C
846 857Right-handed alpha
Helix 35
AD8
C
861 871Right-handed alpha
Helix 36
AD9
C
880 903Right-handed alpha
Helix 37
AE1
C
911 922Right-handed alpha
Helix 38
AE2
C
927 933Right-handed 310
Helix 39
AE3
C
939 944Right-handed alpha
Helix 40
AE4
C
954 962Right-handed alpha
Helix 41
AE5
C
963 972Right-handed alpha
Helix 42
AE6
C
975 990Right-handed alpha
Helix 43
AE7
C
993 1002Right-handed alpha
Helix 44
AE8
B
304 306Right-handed 310
Helix 45
AE9
B
307 317Right-handed alpha
Helix 46
AF1
B
318 322Right-handed 310
Helix 47
AF2
B
326 330Right-handed 310
Helix 48
AF3
B
356 366Right-handed alpha
Helix 49
AF4
B
368 373Right-handed 310
Helix 50
AF5
B
374 392Right-handed alpha
Helix 51
AF6
B
411 416Right-handed alpha
Helix 52
AF7
B
417 427Right-handed alpha
Helix 53
AF8
B
431 445Right-handed alpha
Helix 54
AF9
B
447 466Right-handed alpha
Helix 55
AG1
B
467 494Right-handed alpha
Helix 56
AG2
B
495 500Right-handed alpha
Helix 57
AG3
B
508 520Right-handed alpha
Helix 58
AG4
B
532 539Right-handed alpha
Helix 59
AG5
B
540 546Right-handed 310
Helix 60
AG6
B
552 572Right-handed alpha
Helix 61
AG7
B
579 598Right-handed alpha
Helix 62
AG8
B
605 629Right-handed alpha
Helix 63
AG9
B
632 639Right-handed alpha
Helix 64
AH1
B
648 659Right-handed alpha
Helix 65
AH2
B
660 671Right-handed alpha
Helix 66
AH3
B
672 676Right-handed 310
Helix 67
AH4
B
680 701Right-handed alpha
Helix 68
AH5
B
705 723Right-handed alpha
Helix 69
AH6
B
724 726Right-handed 310
Helix 70
AH7
B
729 743Right-handed alpha
Helix 71
AH8
B
750 761Right-handed alpha
Helix 72
AH9
B
768 786Right-handed alpha
Helix 73
AI1
B
803 812Right-handed alpha
Helix 74
AI2
B
819 825Right-handed alpha
Helix 75
AI3
B
834 841Right-handed alpha
Helix 76
AI4
B
842 845Right-handed 310
Helix 77
AI5
B
846 857Right-handed alpha
Helix 78
AI6
B
861 871Right-handed alpha
Helix 79
AI7
B
880 903Right-handed alpha
Helix 80
AI8
B
911 922Right-handed alpha
Helix 81
AI9
B
937 939Right-handed 310
Helix 82
AJ1
B
940 945Right-handed alpha
Helix 83
AJ2
B
954 962Right-handed alpha
Helix 84
AJ3
B
963 972Right-handed alpha
Helix 85
AJ4
B
975 990Right-handed alpha
Helix 86
AJ5
B
993 1002Right-handed alpha
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There are 4 sheets in PDB entry 8K98. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
10 15first strand
Strand 2
A
21 33anti-parallel
Strand 3
A
58 63anti-parallel
Strand 4
A
67 68anti-parallel
Strand 5
A
171 177anti-parallel
Strand 6
A
191 195anti-parallel
Strand 7
A
198 200first strand
Strand 8
A
219 222anti-parallel
Strand 9
A
233 235anti-parallel
Strand 10
C
574 575anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
338 340first strand
Strand 2
C
346 348anti-parallel
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There are 9 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
10 15first strand
Strand 2
D
21 33anti-parallel
Strand 3
D
58 63anti-parallel
Strand 4
D
67 68anti-parallel
Strand 5
D
171 176anti-parallel
Strand 6
D
192 200anti-parallel
Strand 7
D
218 222anti-parallel
Strand 8
D
233 235anti-parallel
Strand 9
B
574 575anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
338 340first strand
Strand 2
B
346 348anti-parallel
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