Analysis of interatomic Contacts of Structural Units in PDB entry:
8K9C


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K9C entry

There are 2 chains in PDB entry 8K9C (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ALA 111VAL 319
B
 GLU 119PRO 320
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 17 helices in PDB entry 8K9C. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
113 153Right-handed alpha
Helix 2
AA2
A
158 166Right-handed alpha
Helix 3
AA3
A
166 187Right-handed alpha
Helix 4
AA4
A
187 228Right-handed alpha
Helix 5
AA5
A
229 239Right-handed alpha
Helix 6
AA6
A
247 262Right-handed alpha
Helix 7
AA7
A
270 288Right-handed alpha
Helix 8
AA8
A
298 312Right-handed alpha
Helix 9
AA9
A
313 316Right-handed 310
Helix 10
AB1
B
129 153Right-handed alpha
Helix 11
AB2
B
157 166Right-handed alpha
Helix 12
AB3
B
166 228Right-handed alpha
Helix 13
AB4
B
229 239Right-handed alpha
Helix 14
AB5
B
247 262Right-handed alpha
Helix 15
AB6
B
270 288Right-handed alpha
Helix 16
AB7
B
298 312Right-handed alpha
Helix 17
AB8
B
313 316Right-handed 310
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There are 3 sheets in PDB entry 8K9C. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
292 293first strand
Strand 2
A
296 297anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
122 123first strand
Strand 2
B
126 127anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
292 293first strand
Strand 2
B
296 297anti-parallel
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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il