Analysis of interatomic Contacts of Structural Units in PDB entry:
8K9E

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K9E entry

There are 8 chains in PDB entry 8K9E (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ALA 2	ARG 219
B	CYS 76	LYS 1026
C	GLU 16	ARG 464
D	VAL 5	TYR 179
E	CYS 26	ASN 189
F	ILE 11	ASN 407
G	LEU 32	ARG 111
I	MET 1	TRP 37

There are112 helices in PDB entry 8K9E. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	8	36	Right-handed alpha
Helix 2	AA2	A	37	42	Right-handed alpha
Helix 3	AA3	A	54	61	Right-handed alpha
Helix 4	AA4	A	65	70	Right-handed alpha
Helix 5	AA5	A	83	92	Right-handed alpha
Helix 6	AA6	A	98	100	Right-handed 310
Helix 7	AA7	A	101	107	Right-handed alpha
Helix 8	AA8	A	129	136	Right-handed alpha
Helix 9	AA9	A	146	150	Right-handed 310
Helix 10	AB1	A	160	170	Right-handed alpha
Helix 11	AB2	A	171	174	Right-handed 310
Helix 12	AB3	A	191	204	Right-handed alpha
Helix 13	AB4	A	207	212	Right-handed alpha
Helix 14	AB5	A	213	218	Right-handed alpha
Helix 15	AB6	B	141	146	Right-handed alpha
Helix 16	AB7	B	146	152	Right-handed alpha
Helix 17	AB8	B	168	183	Right-handed alpha
Helix 18	AB9	B	200	214	Right-handed alpha
Helix 19	AC1	B	227	238	Right-handed alpha
Helix 20	AC2	B	248	251	Right-handed 310
Helix 21	AC3	B	267	280	Right-handed alpha
Helix 22	AC4	B	299	304	Right-handed alpha
Helix 23	AC5	B	314	328	Right-handed alpha
Helix 24	AC6	B	337	351	Right-handed alpha
Helix 25	AC7	B	367	381	Right-handed alpha
Helix 26	AC8	B	400	415	Right-handed alpha
Helix 27	AC9	B	426	431	Right-handed alpha
Helix 28	AD1	B	432	435	Right-handed 310
Helix 29	AD2	B	436	444	Right-handed alpha
Helix 30	AD3	B	455	460	Right-handed alpha
Helix 31	AD4	B	469	473	Right-handed 310
Helix 32	AD5	B	499	508	Right-handed alpha
Helix 33	AD6	B	514	524	Right-handed alpha
Helix 34	AD7	B	527	538	Right-handed alpha
Helix 35	AD8	B	554	560	Right-handed alpha
Helix 36	AD9	B	583	587	Right-handed 310
Helix 37	AE1	B	588	594	Right-handed alpha
Helix 38	AE2	B	610	619	Right-handed alpha
Helix 39	AE3	B	630	632	Right-handed 310
Helix 40	AE4	B	633	645	Right-handed alpha
Helix 41	AE5	B	744	750	Right-handed alpha
Helix 42	AE6	B	752	757	Right-handed alpha
Helix 43	AE7	B	758	763	Right-handed alpha
Helix 44	AE8	B	798	809	Right-handed alpha
Helix 45	AE9	B	814	820	Right-handed alpha
Helix 46	AF1	B	856	861	Right-handed alpha
Helix 47	AF2	B	886	892	Right-handed alpha
Helix 48	AF3	B	909	916	Right-handed alpha
Helix 49	AF4	B	934	953	Right-handed alpha
Helix 50	AF5	B	966	972	Right-handed alpha
Helix 51	AF6	B	987	994	Right-handed alpha
Helix 52	AF7	B	1021	1026	Right-handed alpha
Helix 53	AF8	C	24	35	Right-handed alpha
Helix 54	AF9	C	39	43	Right-handed 310
Helix 55	AG1	C	44	72	Right-handed alpha
Helix 56	AG2	C	73	76	Right-handed 310
Helix 57	AG3	C	85	98	Right-handed alpha
Helix 58	AG4	C	98	111	Right-handed alpha
Helix 59	AG5	C	119	135	Right-handed alpha
Helix 60	AG6	C	135	141	Right-handed alpha
Helix 61	AG7	C	142	143	Right-handed 310
Helix 62	AG8	C	144	152	Right-handed 310
Helix 63	AG9	C	166	201	Right-handed alpha
Helix 64	AH1	C	209	215	Right-handed alpha
Helix 65	AH2	C	223	256	Right-handed alpha
Helix 66	AH3	C	265	293	Right-handed alpha
Helix 67	AH4	C	300	332	Right-handed alpha
Helix 68	AH5	C	334	347	Right-handed alpha
Helix 69	AH6	C	349	361	Right-handed alpha
Helix 70	AH7	C	364	368	Right-handed 310
Helix 71	AH8	C	369	375	Right-handed alpha
Helix 72	AH9	C	375	404	Right-handed alpha
Helix 73	AI1	C	407	411	Right-handed 310
Helix 74	AI2	C	417	442	Right-handed alpha
Helix 75	AI3	C	450	464	Right-handed alpha
Helix 76	AI4	D	14	25	Right-handed alpha
Helix 77	AI5	D	43	49	Right-handed alpha
Helix 78	AI6	D	54	80	Right-handed alpha
Helix 79	AI7	D	92	96	Right-handed 310
Helix 80	AI8	D	99	123	Right-handed alpha
Helix 81	AI9	D	135	143	Right-handed 310
Helix 82	AJ1	D	158	169	Right-handed alpha
Helix 83	AJ2	E	67	72	Right-handed alpha
Helix 84	AJ3	E	88	102	Right-handed alpha
Helix 85	AJ4	E	115	120	Right-handed alpha
Helix 86	AJ5	E	130	135	Right-handed alpha
Helix 87	AJ6	E	137	147	Right-handed alpha
Helix 88	AJ7	E	170	188	Right-handed alpha
Helix 89	AJ8	F	12	39	Right-handed alpha
Helix 90	AJ9	F	39	55	Right-handed alpha
Helix 91	AK1	F	55	71	Right-handed alpha
Helix 92	AK2	F	73	88	Right-handed alpha
Helix 93	AK3	F	89	97	Right-handed alpha
Helix 94	AK4	F	97	105	Right-handed alpha
Helix 95	AK5	F	122	127	Right-handed alpha
Helix 96	AK6	F	134	140	Right-handed alpha
Helix 97	AK7	F	145	177	Right-handed alpha
Helix 98	AK8	F	183	210	Right-handed alpha
Helix 99	AK9	F	211	214	Right-handed 310
Helix 100	AL1	F	223	245	Right-handed alpha
Helix 101	AL2	F	256	288	Right-handed alpha
Helix 102	AL3	F	293	301	Right-handed alpha
Helix 103	AL4	F	304	315	Right-handed alpha
Helix 104	AL5	F	317	324	Right-handed alpha
Helix 105	AL6	F	332	356	Right-handed alpha
Helix 106	AL7	F	357	359	Right-handed 310
Helix 107	AL8	F	362	366	Right-handed 310
Helix 108	AL9	F	367	390	Right-handed alpha
Helix 109	AM1	G	33	55	Right-handed alpha
Helix 110	AM2	G	70	81	Right-handed alpha
Helix 111	AM3	G	98	107	Right-handed alpha
Helix 112	AM4	I	10	35	Right-handed alpha

There are 15 sheets in PDB entry 8K9E. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	B	83	84	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	107	first strand
Strand 2	B	112	119	anti-parallel
Strand 3	B	124	129	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	160	161	first strand
Strand 2	B	166	167	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	191	194	first strand
Strand 2	B	419	423	parallel
Strand 3	B	446	450	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	246	first strand
Strand 2	B	388	391	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	307	309	first strand
Strand 2	B	290	294	parallel
Strand 3	B	253	257	parallel
Strand 4	B	358	362	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	475	477	first strand
Strand 2	B	485	487	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	571	576	first strand
Strand 2	B	675	680	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	607	609	first strand
Strand 2	B	663	667	parallel
Strand 3	B	651	653	anti-parallel
Strand 4	B	716	717	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	741	743	first strand
Strand 2	B	1016	1018	parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	977	981	first strand
Strand 2	B	785	790	anti-parallel
Strand 3	B	1012	1014	parallel
Strand 4	B	998	999	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	828	831	first strand
Strand 2	B	845	848	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	867	868	first strand
Strand 2	B	876	877	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	898	899	first strand
Strand 2	B	928	929	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	33	36	first strand
Strand 2	D	147	151	anti-parallel
Strand 3	D	7	9	anti-parallel
Strand 4	D	175	177	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K9E

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K9E