Analysis of interatomic Contacts of Structural Units in PDB entry:
8K9H

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K9H entry

There are 8 chains in PDB entry 8K9H (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	MET 1	LYS 217
B	GLN 220	SER 433
C	MET 1	ALA 212
D	LYS 219	LYS 434
E	MET 1	LEU 215
F	GLN 220	LYS 432
G	MET 1	ASP 213
H	LYS 219	LYS 434

There are 57 helices in PDB entry 8K9H. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	4	17	Right-handed alpha
Helix 2	AA2	A	18	20	Right-handed 310
Helix 3	AA3	A	31	36	Right-handed alpha
Helix 4	AA4	A	37	40	Right-handed 310
Helix 5	AA5	A	87	97	Right-handed alpha
Helix 6	AA6	A	131	139	Right-handed alpha
Helix 7	AA7	A	197	205	Right-handed alpha
Helix 8	AA8	B	224	230	Right-handed alpha
Helix 9	AA9	B	249	260	Right-handed alpha
Helix 10	AB1	B	277	284	Right-handed alpha
Helix 11	AB2	B	298	308	Right-handed alpha
Helix 12	AB3	B	316	329	Right-handed alpha
Helix 13	AB4	B	342	346	Right-handed 310
Helix 14	AB5	B	391	396	Right-handed alpha
Helix 15	AB6	B	423	427	Right-handed 310
Helix 16	AB7	C	4	18	Right-handed alpha
Helix 17	AB8	C	31	40	Right-handed 310
Helix 18	AB9	C	87	97	Right-handed alpha
Helix 19	AC1	C	131	139	Right-handed alpha
Helix 20	AC2	C	197	204	Right-handed alpha
Helix 21	AC3	D	224	230	Right-handed alpha
Helix 22	AC4	D	249	260	Right-handed alpha
Helix 23	AC5	D	277	284	Right-handed alpha
Helix 24	AC6	D	298	308	Right-handed alpha
Helix 25	AC7	D	316	330	Right-handed alpha
Helix 26	AC8	D	385	389	Right-handed 310
Helix 27	AC9	D	391	396	Right-handed alpha
Helix 28	AD1	D	423	427	Right-handed 310
Helix 29	AD2	E	4	18	Right-handed alpha
Helix 30	AD3	E	31	40	Right-handed 310
Helix 31	AD4	E	87	97	Right-handed alpha
Helix 32	AD5	E	131	139	Right-handed alpha
Helix 33	AD6	E	197	204	Right-handed alpha
Helix 34	AD7	F	224	230	Right-handed alpha
Helix 35	AD8	F	249	260	Right-handed alpha
Helix 36	AD9	F	278	284	Right-handed alpha
Helix 37	AE1	F	298	308	Right-handed alpha
Helix 38	AE2	F	316	330	Right-handed alpha
Helix 39	AE3	F	385	389	Right-handed 310
Helix 40	AE4	F	391	396	Right-handed alpha
Helix 41	AE5	F	423	427	Right-handed 310
Helix 42	AE6	G	4	18	Right-handed alpha
Helix 43	AE7	G	31	34	Right-handed 310
Helix 44	AE8	G	35	40	Right-handed alpha
Helix 45	AE9	G	87	97	Right-handed alpha
Helix 46	AF1	G	131	139	Right-handed alpha
Helix 47	AF2	G	197	205	Right-handed alpha
Helix 48	AF3	H	224	229	Right-handed alpha
Helix 49	AF4	H	230	232	Right-handed 310
Helix 50	AF5	H	249	260	Right-handed alpha
Helix 51	AF6	H	278	284	Right-handed alpha
Helix 52	AF7	H	298	308	Right-handed alpha
Helix 53	AF8	H	316	330	Right-handed alpha
Helix 54	AF9	H	342	346	Right-handed 310
Helix 55	AG1	H	385	389	Right-handed 310
Helix 56	AG2	H	391	396	Right-handed alpha
Helix 57	AG3	H	423	427	Right-handed 310

There are 22 sheets in PDB entry 8K9H. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4,

There are 10 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	85	first strand
Strand 2	A	53	57	anti-parallel
Strand 3	A	46	49	anti-parallel
Strand 4	A	25	28	parallel
Strand 5	A	102	105	parallel
Strand 6	A	141	145	parallel
Strand 7	A	172	174	parallel
Strand 8	A	178	182	anti-parallel
Strand 9	A	187	192	anti-parallel
Strand 10	A	209	212	parallel

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There are 10 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	78	85	first strand
Strand 2	A	53	57	anti-parallel
Strand 3	A	46	49	anti-parallel
Strand 4	A	25	28	parallel
Strand 5	A	102	105	parallel
Strand 6	A	141	145	parallel
Strand 7	A	172	174	parallel
Strand 8	A	178	182	anti-parallel
Strand 9	A	187	192	anti-parallel
Strand 10	A	215	216	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	116	117	first strand
Strand 2	A	109	111	anti-parallel
Strand 3	A	156	157	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	149	150	first strand
Strand 2	A	153	154	anti-parallel

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There are 7 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	311	314	first strand
Strand 2	B	287	292	parallel
Strand 3	B	264	267	parallel
Strand 4	B	237	240	parallel
Strand 5	B	366	373	parallel
Strand 6	B	399	406	parallel
Strand 7	B	429	432	parallel

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There are 6 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	350	353	first strand
Strand 2	B	356	361	anti-parallel
Strand 3	B	333	336	anti-parallel
Strand 4	H	333	336	anti-parallel
Strand 5	H	357	361	anti-parallel
Strand 6	H	350	352	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	382	383	first strand
Strand 2	B	375	377	anti-parallel
Strand 3	B	409	410	parallel

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There are 8 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	46	47	first strand
Strand 2	C	25	28	parallel
Strand 3	C	102	105	parallel
Strand 4	C	141	145	parallel
Strand 5	C	172	174	parallel
Strand 6	C	178	182	anti-parallel
Strand 7	C	187	192	anti-parallel
Strand 8	C	209	211	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	56	57	first strand
Strand 2	C	78	79	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	109	110	first strand
Strand 2	C	116	117	anti-parallel

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There are 7 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	311	314	first strand
Strand 2	D	287	292	parallel
Strand 3	D	264	267	parallel
Strand 4	D	237	240	parallel
Strand 5	D	366	373	parallel
Strand 6	D	399	406	parallel
Strand 7	D	429	432	parallel

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There are 6 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	350	352	first strand
Strand 2	D	357	361	anti-parallel
Strand 3	D	334	336	anti-parallel
Strand 4	F	333	336	anti-parallel
Strand 5	F	356	361	anti-parallel
Strand 6	F	350	353	anti-parallel

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There are 3 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	382	383	first strand
Strand 2	D	375	377	anti-parallel
Strand 3	D	409	410	parallel

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There are 10 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	78	85	first strand
Strand 2	E	53	57	anti-parallel
Strand 3	E	46	49	anti-parallel
Strand 4	E	25	28	parallel
Strand 5	E	102	105	parallel
Strand 6	E	141	145	parallel
Strand 7	E	172	174	parallel
Strand 8	E	178	182	anti-parallel
Strand 9	E	187	192	anti-parallel
Strand 10	E	209	211	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	116	117	first strand
Strand 2	E	109	111	anti-parallel
Strand 3	E	156	157	parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	149	150	first strand
Strand 2	E	153	154	anti-parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	311	314	first strand
Strand 2	F	287	292	parallel
Strand 3	F	264	267	parallel
Strand 4	F	237	240	parallel
Strand 5	F	366	373	parallel
Strand 6	F	399	406	parallel

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There are 3 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	382	383	first strand
Strand 2	F	375	377	anti-parallel
Strand 3	F	409	410	parallel

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There are 10 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	79	85	first strand
Strand 2	G	53	56	anti-parallel
Strand 3	G	46	49	anti-parallel
Strand 4	G	25	28	parallel
Strand 5	G	102	105	parallel
Strand 6	G	141	145	parallel
Strand 7	G	172	174	parallel
Strand 8	G	178	182	anti-parallel
Strand 9	G	187	192	anti-parallel
Strand 10	G	209	211	parallel

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There are 2 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	109	110	first strand
Strand 2	G	116	117	anti-parallel

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There are 7 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	311	314	first strand
Strand 2	H	287	292	parallel
Strand 3	H	264	267	parallel
Strand 4	H	237	240	parallel
Strand 5	H	366	373	parallel
Strand 6	H	399	406	parallel
Strand 7	H	429	432	parallel

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There are 3 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	382	383	first strand
Strand 2	H	375	377	anti-parallel
Strand 3	H	409	410	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K9H

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K9H