Analysis of interatomic Contacts of Structural Units in PDB entry:
8K9I


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K9I entry

There are 4 chains in PDB entry 8K9I (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
C
 ASP 26ALA 768
K
 GLN 31TRP 146
L
 ASN 24PHE 142
R
 ARG 21PRO 95
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 46 helices in PDB entry 8K9I. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
C
26 46Right-handed alpha
Helix 2
AA2
C
53 67Right-handed alpha
Helix 3
AA3
C
69 88Right-handed alpha
Helix 4
AA4
C
89 95Right-handed alpha
Helix 5
AA5
C
100 121Right-handed alpha
Helix 6
AA6
C
123 129Right-handed alpha
Helix 7
AA7
C
129 134Right-handed alpha
Helix 8
AA8
C
138 151Right-handed alpha
Helix 9
AA9
C
156 175Right-handed alpha
Helix 10
AB1
C
179 195Right-handed alpha
Helix 11
AB2
C
198 203Right-handed alpha
Helix 12
AB3
C
205 225Right-handed alpha
Helix 13
AB4
C
229 252Right-handed alpha
Helix 14
AB5
C
256 269Right-handed alpha
Helix 15
AB6
C
270 273Right-handed 310
Helix 16
AB7
C
275 279Right-handed 310
Helix 17
AB8
C
283 290Right-handed alpha
Helix 18
AB9
C
292 305Right-handed alpha
Helix 19
AC1
C
308 330Right-handed alpha
Helix 20
AC2
C
337 359Right-handed alpha
Helix 21
AC3
C
363 381Right-handed alpha
Helix 22
AC4
C
383 389Right-handed alpha
Helix 23
AC5
C
392 397Right-handed alpha
Helix 24
AC6
C
404 422Right-handed alpha
Helix 25
AC7
C
424 442Right-handed alpha
Helix 26
AC8
C
447 461Right-handed alpha
Helix 27
AC9
C
463 495Right-handed alpha
Helix 28
AD1
C
525 543Right-handed alpha
Helix 29
AD2
C
595 608Right-handed alpha
Helix 30
AD3
C
613 621Right-handed alpha
Helix 31
AD4
C
630 636Right-handed alpha
Helix 32
AD5
C
684 714Right-handed alpha
Helix 33
AD6
C
718 731Right-handed alpha
Helix 34
AD7
C
737 751Right-handed alpha
Helix 35
AD8
K
32 43Right-handed alpha
Helix 36
AD9
K
64 69Right-handed alpha
Helix 37
AE1
K
74 80Right-handed alpha
Helix 38
AE2
K
97 109Right-handed alpha
Helix 39
AE3
K
120 130Right-handed alpha
Helix 40
AE4
K
132 146Right-handed alpha
Helix 41
AE5
L
36 46Right-handed alpha
Helix 42
AE6
L
64 72Right-handed alpha
Helix 43
AE7
L
103 110Right-handed alpha
Helix 44
AE8
L
122 130Right-handed alpha
Helix 45
AE9
L
132 142Right-handed alpha
Helix 46
AF1
R
53 58Right-handed alpha
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There are 6 sheets in PDB entry 8K9I. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
549 550first strand
Strand 2
R
31 32anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
558 559first strand
Strand 2
C
591 593anti-parallel
Strand 3
C
671 673parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
610 612first strand
Strand 2
C
658 660anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
716 717first strand
Strand 2
C
764 765anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
K
52 54first strand
Strand 2
K
61 63anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
L
52 54first strand
Strand 2
L
61 63anti-parallel
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