Analysis of interatomic Contacts of Structural Units in PDB entry:
8K9K

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8K9K entry

There are 7 chains in PDB entry 8K9K (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
R	SER 66	ARG 347
S	TYR 1	TYR 1
S	GLY 3	GLY 3
A	LEU 5	TYR 354
B	SER 2	ASN 340
G	ASN 5	GLU 63
H	ASP 1	LYS 248

There are 30 helices in PDB entry 8K9K. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	R	66	98	Right-handed alpha
Helix 2	AA2	R	103	121	Right-handed alpha
Helix 3	AA3	R	122	133	Right-handed alpha
Helix 4	AA4	R	137	173	Right-handed alpha
Helix 5	AA5	R	173	181	Right-handed alpha
Helix 6	AA6	R	182	207	Right-handed alpha
Helix 7	AA7	R	226	243	Right-handed alpha
Helix 8	AA8	R	243	262	Right-handed alpha
Helix 9	AA9	R	270	308	Right-handed alpha
Helix 10	AB1	R	313	341	Right-handed alpha
Helix 11	AB2	A	8	32	Right-handed alpha
Helix 12	AB3	A	45	53	Right-handed alpha
Helix 13	AB4	A	207	212	Right-handed alpha
Helix 14	AB5	A	213	216	Right-handed 310
Helix 15	AB6	A	228	232	Right-handed 310
Helix 16	AB7	A	241	255	Right-handed alpha
Helix 17	AB8	A	256	260	Right-handed 310
Helix 18	AB9	A	270	281	Right-handed alpha
Helix 19	AC1	A	282	286	Right-handed 310
Helix 20	AC2	A	295	309	Right-handed alpha
Helix 21	AC3	A	330	351	Right-handed alpha
Helix 22	AC4	B	3	25	Right-handed alpha
Helix 23	AC5	B	29	34	Right-handed alpha
Helix 24	AC6	G	6	24	Right-handed alpha
Helix 25	AC7	G	29	45	Right-handed alpha
Helix 26	AC8	G	46	48	Right-handed 310
Helix 27	AC9	G	55	63	Right-handed 310
Helix 28	AD1	H	28	32	Right-handed 310
Helix 29	AD2	H	74	76	Right-handed 310
Helix 30	AD3	H	87	91	Right-handed 310

There are 15 sheets in PDB entry 8K9K. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	R	208	211	first strand
Strand 2	R	218	221	anti-parallel

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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	185	191	first strand
Strand 2	A	194	200	anti-parallel
Strand 3	A	34	39	parallel
Strand 4	A	220	226	parallel
Strand 5	A	263	269	parallel
Strand 6	A	319	322	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	47	51	first strand
Strand 2	B	336	339	anti-parallel
Strand 3	B	327	331	anti-parallel
Strand 4	B	315	320	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	58	63	first strand
Strand 2	B	69	74	anti-parallel
Strand 3	B	78	83	anti-parallel
Strand 4	B	89	94	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	100	105	first strand
Strand 2	B	111	116	anti-parallel
Strand 3	B	120	125	anti-parallel
Strand 4	B	134	140	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	146	153	first strand
Strand 2	B	156	161	anti-parallel
Strand 3	B	166	170	anti-parallel
Strand 4	B	175	180	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	187	192	first strand
Strand 2	B	198	203	anti-parallel
Strand 3	B	208	212	anti-parallel
Strand 4	B	217	222	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	229	234	first strand
Strand 2	B	240	245	anti-parallel
Strand 3	B	250	254	anti-parallel
Strand 4	B	259	264	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	273	278	first strand
Strand 2	B	284	289	anti-parallel
Strand 3	B	294	298	anti-parallel
Strand 4	B	304	308	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	3	7	first strand
Strand 2	H	18	25	anti-parallel
Strand 3	H	78	83	anti-parallel
Strand 4	H	68	73	anti-parallel

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There are 6 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	34	39	anti-parallel
Strand 5	H	45	51	anti-parallel
Strand 6	H	58	60	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	10	12	first strand
Strand 2	H	115	119	parallel
Strand 3	H	92	98	anti-parallel
Strand 4	H	110	111	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	140	141	first strand
Strand 2	H	155	161	anti-parallel
Strand 3	H	211	216	anti-parallel
Strand 4	H	203	208	anti-parallel

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There are 6 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	149	first strand
Strand 2	H	243	247	parallel
Strand 3	H	226	231	anti-parallel
Strand 4	H	174	179	anti-parallel
Strand 5	H	186	190	anti-parallel
Strand 6	H	194	195	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	146	149	first strand
Strand 2	H	243	247	parallel
Strand 3	H	226	231	anti-parallel
Strand 4	H	238	239	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8K9K

Analysis of interatomic Contacts of Structural Units in PDB entry:
8K9K