Analysis of interatomic Contacts of Structural Units in PDB entry:
8K9Q


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K9Q entry

There is 1 chain in PDB entry 8K9Q (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 TRP 139ALA 1150
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 37 helices in PDB entry 8K9Q. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
146 169Right-handed alpha
Helix 2
AA2
A
233 236Right-handed 310
Helix 3
AA3
A
237 251Right-handed alpha
Helix 4
AA4
A
252 254Right-handed 310
Helix 5
AA5
A
255 262Right-handed alpha
Helix 6
AA6
A
277 280Right-handed 310
Helix 7
AA7
A
281 301Right-handed alpha
Helix 8
AA8
A
328 337Right-handed alpha
Helix 9
AA9
A
365 385Right-handed alpha
Helix 10
AB1
A
403 407Right-handed 310
Helix 11
AB2
A
411 416Right-handed 310
Helix 12
AB3
A
444 449Right-handed alpha
Helix 13
AB4
A
449 461Right-handed alpha
Helix 14
AB5
A
474 487Right-handed alpha
Helix 15
AB6
A
610 613Right-handed 310
Helix 16
AB7
A
630 634Right-handed 310
Helix 17
AB8
A
645 649Right-handed alpha
Helix 18
AB9
A
675 678Right-handed alpha
Helix 19
AC1
A
685 693Right-handed alpha
Helix 20
AC2
A
804 810Right-handed alpha
Helix 21
AC3
A
810 816Right-handed alpha
Helix 22
AC4
A
822 843Right-handed alpha
Helix 23
AC5
A
847 858Right-handed alpha
Helix 24
AC6
A
858 872Right-handed alpha
Helix 25
AC7
A
898 902Right-handed 310
Helix 26
AC8
A
910 912Right-handed 310
Helix 27
AC9
A
913 954Right-handed alpha
Helix 28
AD1
A
981 992Right-handed alpha
Helix 29
AD2
A
995 1022Right-handed alpha
Helix 30
AD3
A
1023 1042Right-handed alpha
Helix 31
AD4
A
1043 1048Right-handed alpha
Helix 32
AD5
A
1048 1059Right-handed alpha
Helix 33
AD6
A
1070 1074Right-handed alpha
Helix 34
AD7
A
1075 1084Right-handed alpha
Helix 35
AD8
A
1103 1124Right-handed alpha
Helix 36
AD9
A
1128 1131Right-handed 310
Helix 37
AE1
A
1132 1150Right-handed alpha
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There are 5 sheets in PDB entry 8K9Q. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
186 188first strand
Strand 2
A
204 208anti-parallel
Strand 3
A
266 272anti-parallel
Strand 4
A
222 227parallel
Strand 5
A
321 326parallel
Strand 6
A
347 353parallel
Strand 7
A
397 402parallel
Strand 8
A
428 430parallel
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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
505 506first strand
Strand 2
A
605 608anti-parallel
Strand 3
A
569 575anti-parallel
Strand 4
A
653 658anti-parallel
Strand 5
A
535 540anti-parallel
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There are 5 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
523 528first strand
Strand 2
A
664 674anti-parallel
Strand 3
A
550 556anti-parallel
Strand 4
A
638 644anti-parallel
Strand 5
A
614 616anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
679 681first strand
Strand 2
A
705 710parallel
Strand 3
A
783 788anti-parallel
Strand 4
A
739 743anti-parallel
Strand 5
A
750 754anti-parallel
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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
694 698first strand
Strand 2
A
797 803anti-parallel
Strand 3
A
719 724anti-parallel
Strand 4
A
758 762anti-parallel
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