Analysis of interatomic Contacts of Structural Units in PDB entry:
8K9Z


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8K9Z entry

There are 4 chains in PDB entry 8K9Z (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 GLU 1967THR 2371
B
 GLN 4ALA 148
C
 SER 1968THR 2371
D
 LEU 5ALA 148
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8K9Z. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
1968 1985Right-handed alpha
Helix 2
AA2
A
2012 2027Right-handed alpha
Helix 3
AA3
A
2032 2034Right-handed 310
Helix 4
AA4
A
2035 2049Right-handed alpha
Helix 5
AA5
A
2051 2065Right-handed alpha
Helix 6
AA6
A
2086 2097Right-handed alpha
Helix 7
AA7
A
2106 2109Right-handed 310
Helix 8
AA8
A
2110 2131Right-handed alpha
Helix 9
AA9
A
2135 2162Right-handed alpha
Helix 10
AB1
A
2180 2186Right-handed alpha
Helix 11
AB2
A
2186 2196Right-handed alpha
Helix 12
AB3
A
2208 2213Right-handed 310
Helix 13
AB4
A
2216 2220Right-handed 310
Helix 14
AB5
A
2239 2246Right-handed alpha
Helix 15
AB6
A
2265 2277Right-handed alpha
Helix 16
AB7
A
2279 2287Right-handed alpha
Helix 17
AB8
A
2319 2334Right-handed alpha
Helix 18
AB9
A
2336 2340Right-handed 310
Helix 19
AC1
B
6 21Right-handed alpha
Helix 20
AC2
B
32 39Right-handed alpha
Helix 21
AC3
B
47 57Right-handed alpha
Helix 22
AC4
B
66 80Right-handed alpha
Helix 23
AC5
B
81 92Right-handed alpha
Helix 24
AC6
B
102 114Right-handed alpha
Helix 25
AC7
B
118 128Right-handed alpha
Helix 26
AC8
B
139 147Right-handed alpha
Helix 27
AC9
C
1969 1984Right-handed alpha
Helix 28
AD1
C
2009 2026Right-handed alpha
Helix 29
AD2
C
2032 2034Right-handed 310
Helix 30
AD3
C
2035 2049Right-handed alpha
Helix 31
AD4
C
2051 2064Right-handed alpha
Helix 32
AD5
C
2073 2077Right-handed 310
Helix 33
AD6
C
2086 2092Right-handed alpha
Helix 34
AD7
C
2110 2130Right-handed alpha
Helix 35
AD8
C
2138 2162Right-handed alpha
Helix 36
AD9
C
2180 2186Right-handed alpha
Helix 37
AE1
C
2186 2196Right-handed alpha
Helix 38
AE2
C
2208 2212Right-handed 310
Helix 39
AE3
C
2266 2277Right-handed alpha
Helix 40
AE4
C
2279 2287Right-handed alpha
Helix 41
AE5
C
2319 2334Right-handed alpha
Helix 42
AE6
C
2336 2340Right-handed 310
Helix 43
AE7
D
6 21Right-handed alpha
Helix 44
AE8
D
32 39Right-handed alpha
Helix 45
AE9
D
45 57Right-handed alpha
Helix 46
AF1
D
66 76Right-handed alpha
Helix 47
AF2
D
81 89Right-handed alpha
Helix 48
AF3
D
90 94Right-handed 310
Helix 49
AF4
D
103 114Right-handed alpha
Helix 50
AF5
D
118 130Right-handed alpha
Helix 51
AF6
D
139 147Right-handed alpha
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There are 12 sheets in PDB entry 8K9Z. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2077 2079first strand
Strand 2
A
2103 2105parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2081 2082first strand
Strand 2
A
2166 2171parallel
Strand 3
A
2199 2205parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2176 2177first strand
Strand 2
A
2231 2234parallel
Strand 3
A
2259 2262anti-parallel
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There are 7 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
2288 2292first strand
Strand 2
A
2297 2301anti-parallel
Strand 3
A
2310 2314anti-parallel
Strand 4
A
2343 2347parallel
Strand 5
A
2350 2354anti-parallel
Strand 6
A
2358 2364anti-parallel
Strand 7
A
2368 2369anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
27 28first strand
Strand 2
B
64 65anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
100 101first strand
Strand 2
B
137 138anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2078 2079first strand
Strand 2
C
2104 2105parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2081 2082first strand
Strand 2
C
2166 2171parallel
Strand 3
C
2199 2205parallel
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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2176 2177first strand
Strand 2
C
2231 2233parallel
Strand 3
C
2260 2262anti-parallel
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There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
2288 2292first strand
Strand 2
C
2297 2301anti-parallel
Strand 3
C
2310 2314anti-parallel
Strand 4
C
2343 2347parallel
Strand 5
C
2350 2354anti-parallel
Strand 6
C
2358 2363anti-parallel
Strand 7
C
2369 2370anti-parallel
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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
27 29first strand
Strand 2
D
63 65anti-parallel
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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
100 102first strand
Strand 2
D
136 138anti-parallel
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