Analysis of interatomic Contacts of Structural Units in PDB entry:
8KA8


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KA8 entry

There are 2 chains in PDB entry 8KA8 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 SER 19ALA 614
E
 THR 333GLY 526
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 32 helices in PDB entry 8KA8. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
19 51Right-handed alpha
Helix 2
AA2
A
55 81Right-handed alpha
Helix 3
AA3
A
90 102Right-handed alpha
Helix 4
AA4
A
109 130Right-handed alpha
Helix 5
AA5
A
147 155Right-handed alpha
Helix 6
AA6
A
157 192Right-handed alpha
Helix 7
AA7
A
200 205Right-handed alpha
Helix 8
AA8
A
221 248Right-handed alpha
Helix 9
AA9
A
265 267Right-handed 310
Helix 10
AB1
A
275 279Right-handed 310
Helix 11
AB2
A
294 300Right-handed alpha
Helix 12
AB3
A
303 318Right-handed alpha
Helix 13
AB4
A
324 331Right-handed alpha
Helix 14
AB5
A
365 385Right-handed alpha
Helix 15
AB6
A
389 393Right-handed 310
Helix 16
AB7
A
399 412Right-handed alpha
Helix 17
AB8
A
414 420Right-handed alpha
Helix 18
AB9
A
432 447Right-handed alpha
Helix 19
AC1
A
449 466Right-handed alpha
Helix 20
AC2
A
476 485Right-handed alpha
Helix 21
AC3
A
503 508Right-handed alpha
Helix 22
AC4
A
513 533Right-handed alpha
Helix 23
AC5
A
538 542Right-handed 310
Helix 24
AC6
A
547 558Right-handed alpha
Helix 25
AC7
A
565 575Right-handed alpha
Helix 26
AC8
A
581 588Right-handed alpha
Helix 27
AC9
A
588 599Right-handed alpha
Helix 28
AD1
E
349 353Right-handed 310
Helix 29
AD2
E
365 370Right-handed alpha
Helix 30
AD3
E
405 410Right-handed 310
Helix 31
AD4
E
417 422Right-handed alpha
Helix 32
AD5
E
438 443Right-handed alpha
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There are 6 sheets in PDB entry 8KA8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
132 133first strand
Strand 2
A
141 142anti-parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
262 263first strand
Strand 2
A
487 488parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
347 350first strand
Strand 2
A
356 359anti-parallel
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There are 5 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
354 358first strand
Strand 2
E
394 403anti-parallel
Strand 3
E
507 516anti-parallel
Strand 4
E
432 437anti-parallel
Strand 5
E
376 379anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
452 454first strand
Strand 2
E
492 494anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
473 474first strand
Strand 2
E
488 489anti-parallel
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