Analysis of interatomic Contacts of Structural Units in PDB entry:
8KAG

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KAG entry

There are 3 chains in PDB entry 8KAG (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 2	ASP 1368
A	G 1	C 98
C	C 1	C 20

There are 60 helices in PDB entry 8KAG. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	59	94	Right-handed alpha
Helix 2	AA2	B	97	102	Right-handed alpha
Helix 3	AA3	B	121	132	Right-handed alpha
Helix 4	AA4	B	134	145	Right-handed alpha
Helix 5	AA5	B	150	163	Right-handed alpha
Helix 6	AA6	B	180	196	Right-handed alpha
Helix 7	AA7	B	208	214	Right-handed alpha
Helix 8	AA8	B	217	227	Right-handed alpha
Helix 9	AA9	B	236	247	Right-handed alpha
Helix 10	AB1	B	270	279	Right-handed alpha
Helix 11	AB2	B	286	302	Right-handed alpha
Helix 12	AB3	B	303	306	Right-handed 310
Helix 13	AB4	B	315	343	Right-handed alpha
Helix 14	AB5	B	346	351	Right-handed alpha
Helix 15	AB6	B	358	364	Right-handed alpha
Helix 16	AB7	B	368	383	Right-handed alpha
Helix 17	AB8	B	386	396	Right-handed alpha
Helix 18	AB9	B	404	410	Right-handed 310
Helix 19	AC1	B	411	427	Right-handed alpha
Helix 20	AC2	B	430	436	Right-handed alpha
Helix 21	AC3	B	436	446	Right-handed alpha
Helix 22	AC4	B	477	481	Right-handed 310
Helix 23	AC5	B	483	495	Right-handed alpha
Helix 24	AC6	B	514	526	Right-handed alpha
Helix 25	AC7	B	541	552	Right-handed alpha
Helix 26	AC8	B	560	568	Right-handed alpha
Helix 27	AC9	B	591	601	Right-handed alpha
Helix 28	AD1	B	603	608	Right-handed alpha
Helix 29	AD2	B	612	626	Right-handed alpha
Helix 30	AD3	B	628	637	Right-handed alpha
Helix 31	AD4	B	638	643	Right-handed 310
Helix 32	AD5	B	644	654	Right-handed alpha
Helix 33	AD6	B	678	684	Right-handed alpha
Helix 34	AD7	B	692	697	Right-handed alpha
Helix 35	AD8	B	703	712	Right-handed alpha
Helix 36	AD9	B	730	751	Right-handed alpha
Helix 37	AE1	B	778	783	Right-handed alpha
Helix 38	AE2	B	786	791	Right-handed alpha
Helix 39	AE3	B	794	799	Right-handed alpha
Helix 40	AE4	B	808	813	Right-handed alpha
Helix 41	AE5	B	861	865	Right-handed 310
Helix 42	AE6	B	872	878	Right-handed alpha
Helix 43	AE7	B	879	888	Right-handed alpha
Helix 44	AE8	B	893	906	Right-handed alpha
Helix 45	AE9	B	909	922	Right-handed alpha
Helix 46	AF1	B	926	940	Right-handed alpha
Helix 47	AF2	B	959	970	Right-handed alpha
Helix 48	AF3	B	980	1001	Right-handed alpha
Helix 49	AF4	B	1004	1009	Right-handed alpha
Helix 50	AF5	B	1078	1088	Right-handed alpha
Helix 51	AF6	B	1127	1132	Right-handed alpha
Helix 52	AF7	B	1168	1177	Right-handed alpha
Helix 53	AF8	B	1177	1185	Right-handed alpha
Helix 54	AF9	B	1229	1239	Right-handed alpha
Helix 55	AG1	B	1248	1262	Right-handed alpha
Helix 56	AG2	B	1263	1280	Right-handed alpha
Helix 57	AG3	B	1283	1298	Right-handed alpha
Helix 58	AG4	B	1301	1312	Right-handed alpha
Helix 59	AG5	B	1313	1316	Right-handed 310
Helix 60	AG6	B	1339	1343	Right-handed 310

There are 13 sheets in PDB entry 8KAG. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	22	first strand
Strand 2	B	5	11	anti-parallel
Strand 3	B	758	761	parallel
Strand 4	B	954	957	parallel

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There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	21	22	first strand
Strand 2	B	5	11	anti-parallel
Strand 3	B	15	18	anti-parallel
Strand 4	B	49	52	anti-parallel
Strand 5	B	1093	1096	parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	46	first strand
Strand 2	B	29	35	anti-parallel
Strand 3	B	1357	1358	parallel
Strand 4	B	1349	1350	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	539	first strand
Strand 2	B	528	531	anti-parallel
Strand 3	B	578	580	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	837	840	first strand
Strand 2	B	855	858	anti-parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1049	1052	first strand
Strand 2	B	1056	1059	anti-parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1063	1064	first strand
Strand 2	B	1074	1075	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1120	1121	first strand
Strand 2	B	1133	1134	anti-parallel

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There are 3 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1162	1167	first strand
Strand 2	B	1139	1145	anti-parallel
Strand 3	B	1197	1199	anti-parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1149	1150	first strand
Strand 2	B	1157	1158	anti-parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1204	1205	first strand
Strand 2	B	1346	1347	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1212	1213	first strand
Strand 2	B	1221	1222	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1324	1326	first strand
Strand 2	B	1329	1331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KAG

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KAG