Analysis of interatomic Contacts of Structural Units in PDB entry:
8KAM

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KAM entry

There are 4 chains in PDB entry 8KAM (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	C 5	C 98
B	LYS 4	GLN 1364
C	C 1	G 24
D	T 2	G 12

There are 67 helices in PDB entry 8KAM. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	B	59	94	Right-handed alpha
Helix 2	AA2	B	96	103	Right-handed alpha
Helix 3	AA3	B	121	132	Right-handed alpha
Helix 4	AA4	B	134	145	Right-handed alpha
Helix 5	AA5	B	150	163	Right-handed alpha
Helix 6	AA6	B	180	196	Right-handed alpha
Helix 7	AA7	B	209	214	Right-handed alpha
Helix 8	AA8	B	219	229	Right-handed alpha
Helix 9	AA9	B	236	246	Right-handed alpha
Helix 10	AB1	B	252	257	Right-handed alpha
Helix 11	AB2	B	271	280	Right-handed alpha
Helix 12	AB3	B	283	285	Right-handed 310
Helix 13	AB4	B	286	306	Right-handed alpha
Helix 14	AB5	B	316	341	Right-handed alpha
Helix 15	AB6	B	346	352	Right-handed alpha
Helix 16	AB7	B	358	364	Right-handed alpha
Helix 17	AB8	B	368	376	Right-handed alpha
Helix 18	AB9	B	376	382	Right-handed alpha
Helix 19	AC1	B	387	395	Right-handed alpha
Helix 20	AC2	B	404	409	Right-handed 310
Helix 21	AC3	B	411	427	Right-handed alpha
Helix 22	AC4	B	430	446	Right-handed alpha
Helix 23	AC5	B	477	482	Right-handed alpha
Helix 24	AC6	B	483	494	Right-handed alpha
Helix 25	AC7	B	512	524	Right-handed alpha
Helix 26	AC8	B	541	556	Right-handed alpha
Helix 27	AC9	B	561	567	Right-handed alpha
Helix 28	AD1	B	591	602	Right-handed alpha
Helix 29	AD2	B	603	608	Right-handed alpha
Helix 30	AD3	B	612	626	Right-handed alpha
Helix 31	AD4	B	628	638	Right-handed alpha
Helix 32	AD5	B	639	643	Right-handed 310
Helix 33	AD6	B	644	652	Right-handed alpha
Helix 34	AD7	B	664	669	Right-handed alpha
Helix 35	AD8	B	678	685	Right-handed alpha
Helix 36	AD9	B	692	697	Right-handed alpha
Helix 37	AE1	B	703	714	Right-handed alpha
Helix 38	AE2	B	719	727	Right-handed alpha
Helix 39	AE3	B	730	751	Right-handed alpha
Helix 40	AE4	B	778	780	Right-handed 310
Helix 41	AE5	B	781	791	Right-handed alpha
Helix 42	AE6	B	794	799	Right-handed alpha
Helix 43	AE7	B	802	806	Right-handed 310
Helix 44	AE8	B	808	817	Right-handed alpha
Helix 45	AE9	B	861	865	Right-handed 310
Helix 46	AF1	B	872	880	Right-handed alpha
Helix 47	AF2	B	881	890	Right-handed alpha
Helix 48	AF3	B	893	901	Right-handed alpha
Helix 49	AF4	B	901	906	Right-handed alpha
Helix 50	AF5	B	912	922	Right-handed alpha
Helix 51	AF6	B	926	940	Right-handed alpha
Helix 52	AF7	B	959	971	Right-handed alpha
Helix 53	AF8	B	981	999	Right-handed alpha
Helix 54	AF9	B	1001	1007	Right-handed 310
Helix 55	AG1	B	1031	1040	Right-handed alpha
Helix 56	AG2	B	1077	1088	Right-handed alpha
Helix 57	AG3	B	1170	1175	Right-handed alpha
Helix 58	AG4	B	1177	1185	Right-handed alpha
Helix 59	AG5	B	1191	1195	Right-handed 310
Helix 60	AG6	B	1229	1241	Right-handed alpha
Helix 61	AG7	B	1248	1253	Right-handed alpha
Helix 62	AG8	B	1253	1262	Right-handed alpha
Helix 63	AG9	B	1264	1280	Right-handed alpha
Helix 64	AH1	B	1283	1296	Right-handed alpha
Helix 65	AH2	B	1301	1312	Right-handed alpha
Helix 66	AH3	B	1312	1317	Right-handed alpha
Helix 67	AH4	B	1339	1345	Right-handed alpha

There are 8 sheets in PDB entry 8KAM. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	17	21	first strand
Strand 2	B	6	11	anti-parallel
Strand 3	B	758	763	parallel
Strand 4	B	954	958	parallel

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There are 7 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	42	46	first strand
Strand 2	B	29	36	anti-parallel
Strand 3	B	1357	1360	parallel
Strand 4	B	1346	1350	anti-parallel
Strand 5	B	1203	1206	anti-parallel
Strand 6	B	1210	1214	anti-parallel
Strand 7	B	1220	1221	anti-parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	507	509	first strand
Strand 2	B	659	663	anti-parallel

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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	538	539	first strand
Strand 2	B	528	530	anti-parallel
Strand 3	B	579	580	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	837	840	first strand
Strand 2	B	855	858	anti-parallel

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There are 3 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1107	1111	first strand
Strand 2	B	1133	1135	anti-parallel
Strand 3	B	1119	1121	anti-parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1157	1167	first strand
Strand 2	B	1139	1150	anti-parallel
Strand 3	B	1196	1199	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1324	1326	first strand
Strand 2	B	1329	1331	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KAM

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KAM