Analysis of interatomic Contacts of Structural Units in PDB entry:
8KAO


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KAO entry

There are 3 chains in PDB entry 8KAO (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 8LEU 419
B
 ASN 8LEU 419
C
 ASN 8LEU 419
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 59 helices in PDB entry 8KAO. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
8 24Right-handed alpha
Helix 2
AA2
A
27 36Right-handed alpha
Helix 3
AA3
A
82 100Right-handed alpha
Helix 4
AA4
A
114 118Right-handed 310
Helix 5
AA5
A
119 135Right-handed alpha
Helix 6
AA6
A
136 138Right-handed 310
Helix 7
AA7
A
152 168Right-handed alpha
Helix 8
AA8
A
171 175Right-handed 310
Helix 9
AA9
A
179 183Right-handed 310
Helix 10
AB1
A
185 189Right-handed 310
Helix 11
AB2
A
190 208Right-handed alpha
Helix 12
AB3
A
222 235Right-handed alpha
Helix 13
AB4
A
256 263Right-handed alpha
Helix 14
AB5
A
269 273Right-handed 310
Helix 15
AB6
A
280 286Right-handed alpha
Helix 16
AB7
A
305 309Right-handed 310
Helix 17
AB8
A
323 334Right-handed alpha
Helix 18
AB9
A
339 344Right-handed alpha
Helix 19
AC1
A
345 361Right-handed alpha
Helix 20
AC2
A
365 391Right-handed alpha
Helix 21
AC3
A
396 416Right-handed alpha
Helix 22
AC4
B
9 25Right-handed alpha
Helix 23
AC5
B
27 36Right-handed alpha
Helix 24
AC6
B
82 100Right-handed alpha
Helix 25
AC7
B
114 118Right-handed 310
Helix 26
AC8
B
119 135Right-handed alpha
Helix 27
AC9
B
136 138Right-handed 310
Helix 28
AD1
B
152 168Right-handed alpha
Helix 29
AD2
B
171 175Right-handed 310
Helix 30
AD3
B
179 183Right-handed 310
Helix 31
AD4
B
185 189Right-handed 310
Helix 32
AD5
B
190 207Right-handed alpha
Helix 33
AD6
B
222 234Right-handed alpha
Helix 34
AD7
B
283 287Right-handed alpha
Helix 35
AD8
B
305 309Right-handed 310
Helix 36
AD9
B
323 333Right-handed alpha
Helix 37
AE1
B
339 344Right-handed alpha
Helix 38
AE2
B
345 361Right-handed alpha
Helix 39
AE3
B
365 391Right-handed alpha
Helix 40
AE4
B
396 417Right-handed alpha
Helix 41
AE5
C
9 25Right-handed alpha
Helix 42
AE6
C
27 36Right-handed alpha
Helix 43
AE7
C
82 100Right-handed alpha
Helix 44
AE8
C
114 118Right-handed 310
Helix 45
AE9
C
119 135Right-handed alpha
Helix 46
AF1
C
136 138Right-handed 310
Helix 47
AF2
C
152 168Right-handed alpha
Helix 48
AF3
C
171 175Right-handed 310
Helix 49
AF4
C
179 183Right-handed 310
Helix 50
AF5
C
185 189Right-handed 310
Helix 51
AF6
C
190 208Right-handed alpha
Helix 52
AF7
C
224 235Right-handed alpha
Helix 53
AF8
C
256 266Right-handed alpha
Helix 54
AF9
C
280 286Right-handed alpha
Helix 55
AG1
C
323 333Right-handed alpha
Helix 56
AG2
C
339 344Right-handed alpha
Helix 57
AG3
C
345 361Right-handed alpha
Helix 58
AG4
C
365 391Right-handed alpha
Helix 59
AG5
C
396 416Right-handed alpha
Back to top of page

There are 8 sheets in PDB entry 8KAO. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 48first strand
Strand 2
A
54 65anti-parallel
Strand 3
A
105 112anti-parallel
Strand 4
A
75 78parallel
Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
39 48first strand
Strand 2
A
54 65anti-parallel
Strand 3
A
105 112anti-parallel
Strand 4
A
71 72parallel
Strand 5
A
143 144parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
277 279first strand
Strand 2
A
247 250anti-parallel
Strand 3
A
238 244anti-parallel
Strand 4
A
215 219parallel
Strand 5
A
291 294parallel
Strand 6
A
313 315parallel
Strand 7
A
336 338parallel
Back to list of sheets
Back to top of page

There are 8 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
75 78first strand
Strand 2
B
105 112parallel
Strand 3
B
54 65anti-parallel
Strand 4
B
39 48anti-parallel
Strand 5
C
39 48anti-parallel
Strand 6
C
54 65anti-parallel
Strand 7
C
105 112anti-parallel
Strand 8
C
75 78parallel
Back to list of sheets
Back to top of page

There are 10 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
143 144first strand
Strand 2
B
71 72parallel
Strand 3
B
105 112parallel
Strand 4
B
54 65anti-parallel
Strand 5
B
39 48anti-parallel
Strand 6
C
39 48anti-parallel
Strand 7
C
54 65anti-parallel
Strand 8
C
105 112anti-parallel
Strand 9
C
71 72parallel
Strand 10
C
143 144parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
216 219first strand
Strand 2
B
291 294parallel
Back to list of sheets
Back to top of page

There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
313 315first strand
Strand 2
B
336 338parallel
Back to list of sheets
Back to top of page

There are 7 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
C
277 279first strand
Strand 2
C
247 250anti-parallel
Strand 3
C
238 244anti-parallel
Strand 4
C
215 219parallel
Strand 5
C
291 294parallel
Strand 6
C
313 315parallel
Strand 7
C
336 338parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il