Analysis of interatomic Contacts of Structural Units in PDB entry:
8KAP

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KAP entry

There are 4 chains in PDB entry 8KAP (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	LYS 10	THR 404
B	THR 11	ARG 403
C	THR 11	ARG 403
D	THR 11	ARG 403

There are 64 helices in PDB entry 8KAP. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	26	31	Right-handed alpha
Helix 2	AA2	A	37	45	Right-handed alpha
Helix 3	AA3	A	59	75	Right-handed alpha
Helix 4	AA4	A	84	89	Right-handed alpha
Helix 5	AA5	A	96	113	Right-handed alpha
Helix 6	AA6	A	127	133	Right-handed alpha
Helix 7	AA7	A	134	138	Right-handed 310
Helix 8	AA8	A	140	152	Right-handed alpha
Helix 9	AA9	A	152	157	Right-handed alpha
Helix 10	AB1	A	168	182	Right-handed alpha
Helix 11	AB2	A	195	215	Right-handed alpha
Helix 12	AB3	A	237	249	Right-handed alpha
Helix 13	AB4	A	249	255	Right-handed alpha
Helix 14	AB5	A	296	310	Right-handed alpha
Helix 15	AB6	A	325	346	Right-handed alpha
Helix 16	AB7	A	386	399	Right-handed alpha
Helix 17	AB8	B	26	31	Right-handed alpha
Helix 18	AB9	B	37	45	Right-handed alpha
Helix 19	AC1	B	59	75	Right-handed alpha
Helix 20	AC2	B	84	89	Right-handed alpha
Helix 21	AC3	B	96	113	Right-handed alpha
Helix 22	AC4	B	127	133	Right-handed alpha
Helix 23	AC5	B	134	138	Right-handed 310
Helix 24	AC6	B	140	152	Right-handed alpha
Helix 25	AC7	B	152	157	Right-handed alpha
Helix 26	AC8	B	168	182	Right-handed alpha
Helix 27	AC9	B	195	216	Right-handed alpha
Helix 28	AD1	B	237	246	Right-handed alpha
Helix 29	AD2	B	249	255	Right-handed alpha
Helix 30	AD3	B	296	310	Right-handed alpha
Helix 31	AD4	B	325	346	Right-handed alpha
Helix 32	AD5	B	386	399	Right-handed alpha
Helix 33	AD6	C	26	31	Right-handed alpha
Helix 34	AD7	C	37	45	Right-handed alpha
Helix 35	AD8	C	59	75	Right-handed alpha
Helix 36	AD9	C	84	89	Right-handed alpha
Helix 37	AE1	C	96	113	Right-handed alpha
Helix 38	AE2	C	127	134	Right-handed alpha
Helix 39	AE3	C	135	138	Right-handed 310
Helix 40	AE4	C	140	152	Right-handed alpha
Helix 41	AE5	C	152	157	Right-handed alpha
Helix 42	AE6	C	168	182	Right-handed alpha
Helix 43	AE7	C	195	215	Right-handed alpha
Helix 44	AE8	C	237	246	Right-handed alpha
Helix 45	AE9	C	249	255	Right-handed alpha
Helix 46	AF1	C	296	310	Right-handed alpha
Helix 47	AF2	C	325	346	Right-handed alpha
Helix 48	AF3	C	386	399	Right-handed alpha
Helix 49	AF4	D	26	31	Right-handed alpha
Helix 50	AF5	D	37	45	Right-handed alpha
Helix 51	AF6	D	59	75	Right-handed alpha
Helix 52	AF7	D	84	89	Right-handed alpha
Helix 53	AF8	D	96	113	Right-handed alpha
Helix 54	AF9	D	127	133	Right-handed alpha
Helix 55	AG1	D	134	138	Right-handed 310
Helix 56	AG2	D	140	152	Right-handed alpha
Helix 57	AG3	D	152	157	Right-handed alpha
Helix 58	AG4	D	168	182	Right-handed alpha
Helix 59	AG5	D	195	215	Right-handed alpha
Helix 60	AG6	D	237	249	Right-handed alpha
Helix 61	AG7	D	249	255	Right-handed alpha
Helix 62	AG8	D	296	310	Right-handed alpha
Helix 63	AG9	D	325	346	Right-handed alpha
Helix 64	AH1	D	386	399	Right-handed alpha

There are 16 sheets in PDB entry 8KAP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	13	14	first strand
Strand 2	A	400	401	anti-parallel

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There are 9 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	20	24	first strand
Strand 2	A	78	82	parallel
Strand 3	A	116	122	parallel
Strand 4	A	162	167	parallel
Strand 5	A	221	227	parallel
Strand 6	A	262	266	parallel
Strand 7	A	314	319	parallel
Strand 8	A	350	356	parallel
Strand 9	A	20	24	parallel

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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	231	233	first strand
Strand 2	A	270	272	parallel
Strand 3	A	277	278	anti-parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	374	376	first strand
Strand 2	A	383	385	anti-parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	13	14	first strand
Strand 2	B	400	401	anti-parallel

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There are 9 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	20	24	first strand
Strand 2	B	78	82	parallel
Strand 3	B	116	120	parallel
Strand 4	B	162	167	parallel
Strand 5	B	221	227	parallel
Strand 6	B	262	266	parallel
Strand 7	B	314	319	parallel
Strand 8	B	350	356	parallel
Strand 9	B	20	24	parallel

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There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	231	233	first strand
Strand 2	B	270	273	parallel
Strand 3	B	276	277	anti-parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	374	376	first strand
Strand 2	B	383	385	anti-parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	13	14	first strand
Strand 2	C	400	401	anti-parallel

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There are 9 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	20	24	first strand
Strand 2	C	78	82	parallel
Strand 3	C	116	122	parallel
Strand 4	C	162	167	parallel
Strand 5	C	221	227	parallel
Strand 6	C	262	266	parallel
Strand 7	C	314	319	parallel
Strand 8	C	350	356	parallel
Strand 9	C	20	24	parallel

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There are 3 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	231	233	first strand
Strand 2	C	270	272	parallel
Strand 3	C	277	278	anti-parallel

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There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	374	376	first strand
Strand 2	C	383	385	anti-parallel

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There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	13	14	first strand
Strand 2	D	400	401	anti-parallel

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There are 9 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	20	24	first strand
Strand 2	D	78	82	parallel
Strand 3	D	116	122	parallel
Strand 4	D	162	167	parallel
Strand 5	D	221	227	parallel
Strand 6	D	262	266	parallel
Strand 7	D	314	319	parallel
Strand 8	D	350	356	parallel
Strand 9	D	20	24	parallel

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There are 3 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	231	233	first strand
Strand 2	D	270	273	parallel
Strand 3	D	276	277	anti-parallel

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There are 2 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	374	376	first strand
Strand 2	D	383	385	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KAP

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KAP