Analysis of interatomic Contacts of Structural Units in PDB entry:
8KB3


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KB3 entry

There are 2 chains in PDB entry 8KB3 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1LYS 206
B
 MET 1LYS 206
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
Back to top of page

There are 29 helices in PDB entry 8KB3. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
20 30Right-handed alpha
Helix 2
AA2
A
30 44Right-handed alpha
Helix 3
AA3
A
46 51Right-handed alpha
Helix 4
AA4
A
53 58Right-handed alpha
Helix 5
AA5
A
59 64Right-handed 310
Helix 6
AA6
A
65 67Right-handed 310
Helix 7
AA7
A
68 88Right-handed alpha
Helix 8
AA8
A
96 108Right-handed alpha
Helix 9
AA9
A
109 124Right-handed alpha
Helix 10
AB1
A
149 152Right-handed 310
Helix 11
AB2
A
153 158Right-handed alpha
Helix 12
AB3
A
170 173Right-handed 310
Helix 13
AB4
A
174 179Right-handed alpha
Helix 14
AB5
A
181 193Right-handed alpha
Helix 15
AB6
A
194 206Right-handed alpha
Helix 16
AB7
B
20 30Right-handed alpha
Helix 17
AB8
B
30 44Right-handed alpha
Helix 18
AB9
B
46 51Right-handed alpha
Helix 19
AC1
B
53 58Right-handed alpha
Helix 20
AC2
B
59 64Right-handed 310
Helix 21
AC3
B
65 88Right-handed alpha
Helix 22
AC4
B
96 108Right-handed alpha
Helix 23
AC5
B
109 124Right-handed alpha
Helix 24
AC6
B
149 152Right-handed 310
Helix 25
AC7
B
153 158Right-handed alpha
Helix 26
AC8
B
170 173Right-handed 310
Helix 27
AC9
B
174 179Right-handed alpha
Helix 28
AD1
B
181 190Right-handed alpha
Helix 29
AD2
B
194 206Right-handed alpha
Back to top of page

There are 2 sheets in PDB entry 8KB3. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
138 145first strand
Strand 2
A
128 135anti-parallel
Strand 3
A
162 168anti-parallel
Back to list of sheets
Back to top of page

There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
138 145first strand
Strand 2
B
128 135anti-parallel
Strand 3
B
162 168anti-parallel
Back to list of sheets
Back to top of page
Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il