Analysis of interatomic Contacts of Structural Units in PDB entry:
8KB7

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KB7 entry

There are 4 chains in PDB entry 8KB7 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	ASP 52	THR 580
B	ASP 52	ASN 579
C	ASP 52	THR 580
D	ASP 52	THR 580

There are 81 helices in PDB entry 8KB7. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	52	64	Right-handed alpha
Helix 2	AA2	A	107	113	Right-handed 310
Helix 3	AA3	A	138	143	Right-handed 310
Helix 4	AA4	A	163	171	Right-handed alpha
Helix 5	AA5	A	171	180	Right-handed alpha
Helix 6	AA6	A	184	189	Right-handed alpha
Helix 7	AA7	A	202	207	Right-handed alpha
Helix 8	AA8	A	217	223	Right-handed alpha
Helix 9	AA9	A	260	275	Right-handed alpha
Helix 10	AB1	A	302	315	Right-handed alpha
Helix 11	AB2	A	327	337	Right-handed alpha
Helix 12	AB3	A	346	355	Right-handed 310
Helix 13	AB4	A	370	374	Right-handed 310
Helix 14	AB5	A	375	382	Right-handed alpha
Helix 15	AB6	A	397	399	Right-handed 310
Helix 16	AB7	A	408	412	Right-handed 310
Helix 17	AB8	A	418	428	Right-handed alpha
Helix 18	AB9	A	439	447	Right-handed alpha
Helix 19	AC1	A	453	463	Right-handed alpha
Helix 20	AC2	A	509	515	Right-handed 310
Helix 21	AC3	B	53	64	Right-handed alpha
Helix 22	AC4	B	107	113	Right-handed 310
Helix 23	AC5	B	138	143	Right-handed 310
Helix 24	AC6	B	163	171	Right-handed alpha
Helix 25	AC7	B	171	180	Right-handed alpha
Helix 26	AC8	B	184	189	Right-handed alpha
Helix 27	AC9	B	202	207	Right-handed alpha
Helix 28	AD1	B	217	223	Right-handed alpha
Helix 29	AD2	B	260	275	Right-handed alpha
Helix 30	AD3	B	302	315	Right-handed alpha
Helix 31	AD4	B	327	337	Right-handed alpha
Helix 32	AD5	B	346	355	Right-handed 310
Helix 33	AD6	B	370	374	Right-handed 310
Helix 34	AD7	B	375	383	Right-handed alpha
Helix 35	AD8	B	397	399	Right-handed 310
Helix 36	AD9	B	408	412	Right-handed 310
Helix 37	AE1	B	418	428	Right-handed alpha
Helix 38	AE2	B	439	447	Right-handed alpha
Helix 39	AE3	B	453	463	Right-handed alpha
Helix 40	AE4	B	509	515	Right-handed 310
Helix 41	AE5	C	53	64	Right-handed alpha
Helix 42	AE6	C	107	113	Right-handed 310
Helix 43	AE7	C	138	143	Right-handed 310
Helix 44	AE8	C	163	171	Right-handed alpha
Helix 45	AE9	C	171	180	Right-handed alpha
Helix 46	AF1	C	184	189	Right-handed alpha
Helix 47	AF2	C	202	207	Right-handed alpha
Helix 48	AF3	C	217	223	Right-handed alpha
Helix 49	AF4	C	260	275	Right-handed alpha
Helix 50	AF5	C	302	315	Right-handed alpha
Helix 51	AF6	C	327	337	Right-handed alpha
Helix 52	AF7	C	346	355	Right-handed 310
Helix 53	AF8	C	370	374	Right-handed 310
Helix 54	AF9	C	375	383	Right-handed alpha
Helix 55	AG1	C	397	399	Right-handed 310
Helix 56	AG2	C	408	412	Right-handed 310
Helix 57	AG3	C	418	428	Right-handed alpha
Helix 58	AG4	C	439	447	Right-handed alpha
Helix 59	AG5	C	453	463	Right-handed alpha
Helix 60	AG6	C	509	515	Right-handed 310
Helix 61	AG7	D	53	64	Right-handed alpha
Helix 62	AG8	D	73	77	Right-handed 310
Helix 63	AG9	D	107	113	Right-handed 310
Helix 64	AH1	D	138	143	Right-handed 310
Helix 65	AH2	D	163	171	Right-handed alpha
Helix 66	AH3	D	171	180	Right-handed alpha
Helix 67	AH4	D	184	189	Right-handed alpha
Helix 68	AH5	D	202	207	Right-handed alpha
Helix 69	AH6	D	217	223	Right-handed alpha
Helix 70	AH7	D	260	275	Right-handed alpha
Helix 71	AH8	D	302	315	Right-handed alpha
Helix 72	AH9	D	327	337	Right-handed alpha
Helix 73	AI1	D	346	355	Right-handed 310
Helix 74	AI2	D	370	374	Right-handed 310
Helix 75	AI3	D	375	383	Right-handed alpha
Helix 76	AI4	D	397	399	Right-handed 310
Helix 77	AI5	D	408	412	Right-handed 310
Helix 78	AI6	D	418	428	Right-handed alpha
Helix 79	AI7	D	439	447	Right-handed alpha
Helix 80	AI8	D	453	463	Right-handed alpha
Helix 81	AI9	D	509	515	Right-handed 310

There are 36 sheets in PDB entry 8KB7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8, AB9, AC1, AC2, AC3, AC4, AC5, AC6, AC7, AC8, AC9, AD1, AD2, AD3, AD4, AD5, AD6, AD7, AD8, AD9,

There are 7 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	102	104	first strand
Strand 2	A	66	70	parallel
Strand 3	A	78	82	anti-parallel
Strand 4	A	232	234	anti-parallel
Strand 5	A	153	156	parallel
Strand 6	A	190	193	parallel
Strand 7	A	215	216	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	132	136	first strand
Strand 2	A	92	97	parallel
Strand 3	A	84	87	anti-parallel
Strand 4	A	226	229	anti-parallel
Strand 5	A	147	149	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	117	118	first strand
Strand 2	A	129	130	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	243	244	first strand
Strand 2	A	252	253	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	317	321	first strand
Strand 2	A	288	292	parallel
Strand 3	A	340	344	parallel
Strand 4	A	360	365	parallel
Strand 5	A	389	394	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	401	402	first strand
Strand 2	A	449	450	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	486	491	first strand
Strand 2	A	502	507	anti-parallel
Strand 3	A	543	546	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	539	first strand
Strand 2	A	520	528	anti-parallel
Strand 3	A	555	564	anti-parallel
Strand 4	A	568	569	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	535	539	first strand
Strand 2	A	520	528	anti-parallel
Strand 3	A	555	564	anti-parallel
Strand 4	A	576	579	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	102	104	first strand
Strand 2	B	66	70	parallel
Strand 3	B	78	82	anti-parallel
Strand 4	B	232	234	anti-parallel
Strand 5	B	153	156	parallel
Strand 6	B	190	193	parallel
Strand 7	B	215	216	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	132	136	first strand
Strand 2	B	92	97	parallel
Strand 3	B	84	87	anti-parallel
Strand 4	B	226	229	anti-parallel
Strand 5	B	147	149	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	117	118	first strand
Strand 2	B	129	130	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	243	244	first strand
Strand 2	B	252	253	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	317	321	first strand
Strand 2	B	288	292	parallel
Strand 3	B	340	344	parallel
Strand 4	B	360	365	parallel
Strand 5	B	389	394	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	401	402	first strand
Strand 2	B	449	450	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	486	490	first strand
Strand 2	B	503	507	anti-parallel
Strand 3	B	543	545	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	539	first strand
Strand 2	B	520	528	anti-parallel
Strand 3	B	556	564	anti-parallel
Strand 4	B	568	569	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AB9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	539	first strand
Strand 2	B	520	528	anti-parallel
Strand 3	B	556	564	anti-parallel
Strand 4	B	576	578	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AC1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	102	104	first strand
Strand 2	C	66	70	parallel
Strand 3	C	78	82	anti-parallel
Strand 4	C	232	234	anti-parallel
Strand 5	C	153	156	parallel
Strand 6	C	190	193	parallel
Strand 7	C	215	216	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	132	136	first strand
Strand 2	C	92	97	parallel
Strand 3	C	84	87	anti-parallel
Strand 4	C	226	229	anti-parallel
Strand 5	C	147	149	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	117	118	first strand
Strand 2	C	129	130	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	243	244	first strand
Strand 2	C	252	253	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AC5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	317	321	first strand
Strand 2	C	288	292	parallel
Strand 3	C	340	344	parallel
Strand 4	C	360	365	parallel
Strand 5	C	389	394	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AC6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	401	402	first strand
Strand 2	C	449	450	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AC7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	486	492	first strand
Strand 2	C	502	507	anti-parallel
Strand 3	C	543	546	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	539	first strand
Strand 2	C	520	528	anti-parallel
Strand 3	C	555	564	anti-parallel
Strand 4	C	568	572	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AC9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	536	539	first strand
Strand 2	C	520	528	anti-parallel
Strand 3	C	555	564	anti-parallel
Strand 4	C	576	579	anti-parallel

Back to list of sheets
Back to top of page

There are 7 strands in AD1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	102	104	first strand
Strand 2	D	66	70	parallel
Strand 3	D	78	82	anti-parallel
Strand 4	D	232	234	anti-parallel
Strand 5	D	153	156	parallel
Strand 6	D	190	193	parallel
Strand 7	D	215	216	parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	132	136	first strand
Strand 2	D	92	97	parallel
Strand 3	D	84	87	anti-parallel
Strand 4	D	226	229	anti-parallel
Strand 5	D	147	149	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	117	118	first strand
Strand 2	D	129	130	anti-parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	243	244	first strand
Strand 2	D	252	253	anti-parallel

Back to list of sheets
Back to top of page

There are 5 strands in AD5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	317	321	first strand
Strand 2	D	288	292	parallel
Strand 3	D	340	344	parallel
Strand 4	D	360	365	parallel
Strand 5	D	389	394	parallel

Back to list of sheets
Back to top of page

There are 2 strands in AD6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	401	402	first strand
Strand 2	D	449	450	anti-parallel

Back to list of sheets
Back to top of page

There are 3 strands in AD7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	486	491	first strand
Strand 2	D	502	507	anti-parallel
Strand 3	D	543	546	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	536	539	first strand
Strand 2	D	520	528	anti-parallel
Strand 3	D	555	564	anti-parallel
Strand 4	D	568	572	anti-parallel

Back to list of sheets
Back to top of page

There are 4 strands in AD9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	536	539	first strand
Strand 2	D	520	528	anti-parallel
Strand 3	D	555	564	anti-parallel
Strand 4	D	576	579	anti-parallel

Back to list of sheets
Back to top of page

Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KB7

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KB7