Analysis of interatomic Contacts of Structural Units in PDB entry:
8KB8

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KB8 entry

There are 4 chains in PDB entry 8KB8 (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	GLN 394	HIS 745
B	GLN 394	ALA 744
C	LYS 5	LYS 175
D	LYS 5	LYS 175

There are 16 helices in PDB entry 8KB8. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	646	650	Right-handed 310
Helix 2	AA2	B	646	650	Right-handed 310
Helix 3	AA3	C	20	29	Right-handed alpha
Helix 4	AA4	C	74	79	Right-handed alpha
Helix 5	AA5	C	92	98	Right-handed alpha
Helix 6	AA6	C	98	111	Right-handed alpha
Helix 7	AA7	C	114	118	Right-handed 310
Helix 8	AA8	C	135	146	Right-handed alpha
Helix 9	AA9	C	161	174	Right-handed alpha
Helix 10	AB1	D	20	31	Right-handed alpha
Helix 11	AB2	D	74	81	Right-handed alpha
Helix 12	AB3	D	92	98	Right-handed alpha
Helix 13	AB4	D	98	111	Right-handed alpha
Helix 14	AB5	D	114	118	Right-handed 310
Helix 15	AB6	D	135	146	Right-handed alpha
Helix 16	AB7	D	161	174	Right-handed alpha

There are 17 sheets in PDB entry 8KB8. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5, AB6, AB7, AB8,

There are 4 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	396	404	first strand
Strand 2	A	737	744	anti-parallel
Strand 3	A	725	732	anti-parallel
Strand 4	A	714	722	anti-parallel

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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	411	416	first strand
Strand 2	A	422	427	anti-parallel
Strand 3	A	431	436	anti-parallel
Strand 4	A	442	448	anti-parallel

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There are 4 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	453	458	first strand
Strand 2	A	465	470	anti-parallel
Strand 3	A	474	479	anti-parallel
Strand 4	A	484	490	anti-parallel

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There are 4 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	497	503	first strand
Strand 2	A	509	515	anti-parallel
Strand 3	A	540	546	anti-parallel
Strand 4	A	551	555	anti-parallel

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There are 4 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	565	570	first strand
Strand 2	A	576	581	anti-parallel
Strand 3	A	585	590	anti-parallel
Strand 4	A	596	601	anti-parallel

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There are 4 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	607	612	first strand
Strand 2	A	618	623	anti-parallel
Strand 3	A	627	632	anti-parallel
Strand 4	A	639	644	anti-parallel

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There are 4 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	653	656	first strand
Strand 2	A	661	665	anti-parallel
Strand 3	B	661	665	anti-parallel
Strand 4	B	653	656	anti-parallel

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There are 4 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	672	674	first strand
Strand 2	A	680	683	anti-parallel
Strand 3	A	690	693	anti-parallel
Strand 4	A	703	706	anti-parallel

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There are 4 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	397	404	first strand
Strand 2	B	737	743	anti-parallel
Strand 3	B	725	732	anti-parallel
Strand 4	B	714	722	anti-parallel

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There are 4 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	411	416	first strand
Strand 2	B	422	427	anti-parallel
Strand 3	B	431	436	anti-parallel
Strand 4	B	442	448	anti-parallel

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There are 4 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	453	458	first strand
Strand 2	B	465	470	anti-parallel
Strand 3	B	474	479	anti-parallel
Strand 4	B	484	490	anti-parallel

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There are 4 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	497	503	first strand
Strand 2	B	509	515	anti-parallel
Strand 3	B	540	546	anti-parallel
Strand 4	B	552	555	anti-parallel

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There are 4 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	565	570	first strand
Strand 2	B	576	581	anti-parallel
Strand 3	B	585	590	anti-parallel
Strand 4	B	593	601	anti-parallel

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There are 4 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	607	612	first strand
Strand 2	B	618	623	anti-parallel
Strand 3	B	627	632	anti-parallel
Strand 4	B	638	644	anti-parallel

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There are 4 strands in AB6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	672	674	first strand
Strand 2	B	680	683	anti-parallel
Strand 3	B	690	693	anti-parallel
Strand 4	B	702	706	anti-parallel

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There are 6 strands in AB7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	43	51	first strand
Strand 2	C	56	64	anti-parallel
Strand 3	C	7	14	parallel
Strand 4	C	83	89	parallel
Strand 5	C	120	125	parallel
Strand 6	C	151	154	parallel

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There are 6 strands in AB8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	43	52	first strand
Strand 2	D	55	64	anti-parallel
Strand 3	D	6	14	parallel
Strand 4	D	83	89	parallel
Strand 5	D	120	125	parallel
Strand 6	D	151	153	parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KB8

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KB8