Analysis of interatomic Contacts of Structural Units in PDB entry:
8KBY

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KBY entry

There is 1 chain in PDB entry 8KBY (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
B	ASP 173	ASP 1735

There are 11 helices in PDB entry 8KBY. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	1	B	292	304	Right-handed alpha
Helix 2	2	B	452	462	Right-handed alpha
Helix 3	3	B	600	609	Right-handed alpha
Helix 4	4	B	797	807	Right-handed alpha
Helix 5	5	B	828	841	Right-handed alpha
Helix 6	6	B	1082	1093	Right-handed alpha
Helix 7	7	B	1224	1237	Right-handed alpha
Helix 8	8	B	1591	1591	Right-handed alpha
Helix 9	9	B	1595	1607	Right-handed alpha
Helix 10	10	B	1691	1699	Right-handed alpha
Helix 11	11	B	1722	1729	Right-handed alpha

There are 4 sheets in PDB entry 8KBY. Click on sheet of interest to get list of strands forming it: A, B, C, D,

There are 32 strands in A sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	173	176	first strand
Strand 2	B	197	202	anti-parallel
Strand 3	B	223	229	anti-parallel
Strand 4	B	258	265	anti-parallel
Strand 5	B	276	282	anti-parallel
Strand 6	B	425	431	parallel
Strand 7	B	495	503	anti-parallel
Strand 8	B	508	517	anti-parallel
Strand 9	B	556	566	anti-parallel
Strand 10	B	578	588	anti-parallel
Strand 11	B	629	638	parallel
Strand 12	B	677	684	anti-parallel
Strand 13	B	692	697	anti-parallel
Strand 14	B	735	740	anti-parallel
Strand 15	B	811	817	anti-parallel
Strand 16	B	926	932	parallel
Strand 17	B	965	971	anti-parallel
Strand 18	B	979	986	anti-parallel
Strand 19	B	1046	1055	anti-parallel
Strand 20	B	1060	1070	anti-parallel
Strand 21	B	1107	1117	parallel
Strand 22	B	1138	1146	anti-parallel
Strand 23	B	1151	1159	anti-parallel
Strand 24	B	1189	1196	anti-parallel
Strand 25	B	1209	1215	anti-parallel
Strand 26	B	1417	1422	parallel
Strand 27	B	1489	1495	anti-parallel
Strand 28	B	1515	1523	anti-parallel
Strand 29	B	1558	1565	anti-parallel
Strand 30	B	1576	1582	anti-parallel
Strand 31	B	1666	1671	parallel
Strand 32	B	1712	1714	anti-parallel

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There are 9 strands in B sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	536	543	first strand
Strand 2	B	519	524	anti-parallel
Strand 3	B	487	493	anti-parallel
Strand 4	B	433	439	anti-parallel
Strand 5	B	284	290	parallel
Strand 6	B	250	256	anti-parallel
Strand 7	B	232	239	anti-parallel
Strand 8	B	191	195	anti-parallel
Strand 9	B	178	181	anti-parallel

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There are 19 strands in C sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	591	597	first strand
Strand 2	B	640	646	parallel
Strand 3	B	668	674	anti-parallel
Strand 4	B	700	706	anti-parallel
Strand 5	B	713	719	anti-parallel
Strand 6	B	819	824	anti-parallel
Strand 7	B	934	939	parallel
Strand 8	B	958	963	anti-parallel
Strand 9	B	988	993	anti-parallel
Strand 10	B	1018	1023	anti-parallel
Strand 11	B	1072	1076	anti-parallel
Strand 12	B	1119	1123	parallel
Strand 13	B	1131	1136	anti-parallel
Strand 14	B	1161	1166	anti-parallel
Strand 15	B	1181	1186	anti-parallel
Strand 16	B	1218	1222	anti-parallel
Strand 17	B	1424	1429	parallel
Strand 18	B	1479	1487	anti-parallel
Strand 19	B	1525	1530	anti-parallel

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There are 4 strands in D sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	1539	1542	first strand
Strand 2	B	1585	1590	anti-parallel
Strand 3	B	1673	1678	parallel
Strand 4	B	1705	1709	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KBY

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KBY