Analysis of interatomic Contacts of Structural Units in PDB entry:
8KC7


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KC7 entry

There are 6 chains in PDB entry 8KC7 (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 MET 1VAL 426
B
 SER 661LEU 1324
D
 ILE 220MET 401
E
 LYS 33LEU 577
F
 LEU 222TYR 373
G
 ASP 261SER 579
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 74 helices in PDB entry 8KC7. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
28 32Right-handed 310
Helix 2
AA2
A
43 53Right-handed alpha
Helix 3
AA3
A
54 55Right-handed 310
Helix 4
AA4
A
56 60Right-handed 310
Helix 5
AA5
A
70 75Right-handed alpha
Helix 6
AA6
A
79 87Right-handed alpha
Helix 7
AA7
A
93 96Right-handed 310
Helix 8
AA8
A
97 104Right-handed alpha
Helix 9
AA9
A
115 136Right-handed alpha
Helix 10
AB1
A
164 174Right-handed alpha
Helix 11
AB2
A
190 197Right-handed alpha
Helix 12
AB3
A
226 230Right-handed 310
Helix 13
AB4
A
243 262Right-handed alpha
Helix 14
AB5
A
287 300Right-handed alpha
Helix 15
AB6
A
314 330Right-handed alpha
Helix 16
AB7
A
343 347Right-handed 310
Helix 17
AB8
A
365 381Right-handed alpha
Helix 18
AB9
A
382 384Right-handed 310
Helix 19
AC1
B
667 677Right-handed alpha
Helix 20
AC2
B
678 694Right-handed alpha
Helix 21
AC3
B
698 710Right-handed alpha
Helix 22
AC4
B
713 725Right-handed alpha
Helix 23
AC5
B
771 778Right-handed alpha
Helix 24
AC6
B
785 790Right-handed alpha
Helix 25
AC7
B
801 840Right-handed alpha
Helix 26
AC8
B
843 848Right-handed alpha
Helix 27
AC9
B
861 871Right-handed alpha
Helix 28
AD1
B
872 886Right-handed alpha
Helix 29
AD2
B
890 922Right-handed alpha
Helix 30
AD3
B
923 929Right-handed alpha
Helix 31
AD4
B
931 942Right-handed alpha
Helix 32
AD5
B
944 957Right-handed alpha
Helix 33
AD6
B
982 999Right-handed alpha
Helix 34
AD7
B
1003 1022Right-handed alpha
Helix 35
AD8
B
1141 1164Right-handed alpha
Helix 36
AD9
B
1164 1174Right-handed alpha
Helix 37
AE1
B
1178 1184Right-handed alpha
Helix 38
AE2
B
1202 1217Right-handed alpha
Helix 39
AE3
B
1220 1233Right-handed alpha
Helix 40
AE4
B
1236 1240Right-handed 310
Helix 41
AE5
B
1241 1256Right-handed alpha
Helix 42
AE6
B
1259 1273Right-handed alpha
Helix 43
AE7
B
1281 1293Right-handed alpha
Helix 44
AE8
D
225 241Right-handed alpha
Helix 45
AE9
D
253 267Right-handed alpha
Helix 46
AF1
D
273 293Right-handed alpha
Helix 47
AF2
D
299 301Right-handed 310
Helix 48
AF3
D
302 316Right-handed alpha
Helix 49
AF4
D
327 345Right-handed alpha
Helix 50
AF5
D
348 369Right-handed alpha
Helix 51
AF6
D
369 374Right-handed alpha
Helix 52
AF7
D
391 399Right-handed alpha
Helix 53
AF8
E
52 57Right-handed alpha
Helix 54
AF9
E
305 310Right-handed alpha
Helix 55
AG1
E
321 326Right-handed alpha
Helix 56
AG2
E
327 329Right-handed 310
Helix 57
AG3
E
333 335Right-handed 310
Helix 58
AG4
E
336 343Right-handed alpha
Helix 59
AG5
E
357 361Right-handed 310
Helix 60
AG6
E
398 400Right-handed 310
Helix 61
AG7
E
401 407Right-handed alpha
Helix 62
AG8
E
430 434Right-handed 310
Helix 63
AG9
E
450 452Right-handed 310
Helix 64
AH1
E
499 503Right-handed 310
Helix 65
AH2
E
543 577Right-handed alpha
Helix 66
AH3
F
229 243Right-handed alpha
Helix 67
AH4
F
253 266Right-handed alpha
Helix 68
AH5
F
275 291Right-handed alpha
Helix 69
AH6
F
299 313Right-handed alpha
Helix 70
AH7
F
328 343Right-handed alpha
Helix 71
AH8
F
348 368Right-handed alpha
Helix 72
AH9
G
303 313Right-handed alpha
Helix 73
AI1
G
321 329Right-handed alpha
Helix 74
AI2
G
542 578Right-handed alpha
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There are 8 sheets in PDB entry 8KC7. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
62 64first strand
Strand 2
A
21 24parallel
Strand 3
A
141 144parallel
Strand 4
A
305 308parallel
Strand 5
A
266 270parallel
Strand 6
A
180 184parallel
Strand 7
A
203 210parallel
Strand 8
A
233 238parallel
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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
756 757first strand
Strand 2
B
782 783anti-parallel
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There are 3 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
1139 1140first strand
Strand 2
B
1300 1305anti-parallel
Strand 3
B
1312 1317anti-parallel
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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
D
244 245first strand
Strand 2
D
388 389anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
273 274first strand
Strand 2
E
281 282anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
365 366first strand
Strand 2
E
372 373anti-parallel
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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
437 439first strand
Strand 2
E
446 448anti-parallel
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There are 3 strands in AA8 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
E
506 507first strand
Strand 2
E
539 542parallel
Strand 3
E
520 522parallel
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