Analysis of interatomic Contacts of Structural Units in PDB entry:
8KCB

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KCB entry

There are 11 chains in PDB entry 8KCB (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
D	THR 56	THR 142
C	GLU 55	SER 143
F	VAL 46	ALA 135
E	ALA 47	ALA 135
H	GLY 13	PHE 100
G	ASP 24	PHE 100
A	SER 17	ASN 105
B	SER 17	ASN 105
I	C 1	A 126
J	T 1	G 126
K	GLU 184	PRO 753

There are 57 helices in PDB entry 8KCB. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	D	57	69	Right-handed alpha
Helix 2	AA2	D	75	104	Right-handed alpha
Helix 3	AA3	D	110	122	Right-handed alpha
Helix 4	AA4	D	123	142	Right-handed alpha
Helix 5	AA5	C	57	69	Right-handed alpha
Helix 6	AA6	C	75	104	Right-handed alpha
Helix 7	AA7	C	110	122	Right-handed alpha
Helix 8	AA8	C	124	143	Right-handed alpha
Helix 9	AA9	F	47	57	Right-handed alpha
Helix 10	AB1	F	63	79	Right-handed alpha
Helix 11	AB2	F	85	114	Right-handed alpha
Helix 12	AB3	F	120	132	Right-handed alpha
Helix 13	AB4	E	48	57	Right-handed alpha
Helix 14	AB5	E	63	79	Right-handed alpha
Helix 15	AB6	E	85	114	Right-handed alpha
Helix 16	AB7	E	120	132	Right-handed alpha
Helix 17	AB8	H	24	29	Right-handed 310
Helix 18	AB9	H	30	42	Right-handed alpha
Helix 19	AC1	H	49	76	Right-handed alpha
Helix 20	AC2	H	82	94	Right-handed alpha
Helix 21	AC3	G	25	29	Right-handed 310
Helix 22	AC4	G	30	42	Right-handed alpha
Helix 23	AC5	G	48	76	Right-handed alpha
Helix 24	AC6	G	82	93	Right-handed alpha
Helix 25	AC7	A	18	23	Right-handed alpha
Helix 26	AC8	A	27	38	Right-handed alpha
Helix 27	AC9	A	46	74	Right-handed alpha
Helix 28	AD1	A	80	91	Right-handed alpha
Helix 29	AD2	A	91	98	Right-handed alpha
Helix 30	AD3	B	18	23	Right-handed alpha
Helix 31	AD4	B	27	38	Right-handed alpha
Helix 32	AD5	B	46	74	Right-handed alpha
Helix 33	AD6	B	80	91	Right-handed alpha
Helix 34	AD7	B	91	99	Right-handed alpha
Helix 35	AD8	K	185	194	Right-handed alpha
Helix 36	AD9	K	203	220	Right-handed alpha
Helix 37	AE1	K	233	247	Right-handed alpha
Helix 38	AE2	K	258	273	Right-handed alpha
Helix 39	AE3	K	284	296	Right-handed alpha
Helix 40	AE4	K	310	318	Right-handed alpha
Helix 41	AE5	K	335	339	Right-handed 310
Helix 42	AE6	K	343	352	Right-handed alpha
Helix 43	AE7	K	369	380	Right-handed alpha
Helix 44	AE8	K	386	394	Right-handed alpha
Helix 45	AE9	K	411	425	Right-handed alpha
Helix 46	AF1	K	432	437	Right-handed alpha
Helix 47	AF2	K	453	463	Right-handed alpha
Helix 48	AF3	K	490	498	Right-handed alpha
Helix 49	AF4	K	499	509	Right-handed alpha
Helix 50	AF5	K	515	523	Right-handed alpha
Helix 51	AF6	K	525	540	Right-handed alpha
Helix 52	AF7	K	549	564	Right-handed alpha
Helix 53	AF8	K	575	588	Right-handed alpha
Helix 54	AF9	K	623	633	Right-handed alpha
Helix 55	AG1	K	653	672	Right-handed alpha
Helix 56	AG2	K	706	711	Right-handed alpha
Helix 57	AG3	K	714	723	Right-handed alpha

There are 10 sheets in PDB entry 8KCB. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	73	74	first strand
Strand 2	A	78	79	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	D	108	109	first strand
Strand 2	A	43	44	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	73	74	first strand
Strand 2	B	78	79	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	C	108	109	first strand
Strand 2	B	43	44	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	84	first strand
Strand 2	H	80	81	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	G	80	81	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	H	97	98	first strand
Strand 2	A	102	103	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	G	96	97	first strand
Strand 2	B	101	102	parallel

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There are 7 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	278	279	first strand
Strand 2	K	306	309	parallel
Strand 3	K	253	256	parallel
Strand 4	K	327	333	parallel
Strand 5	K	354	360	parallel
Strand 6	K	224	225	parallel
Strand 7	K	428	429	parallel

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There are 8 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	567	570	first strand
Strand 2	K	595	599	parallel
Strand 3	K	543	547	parallel
Strand 4	K	614	617	parallel
Strand 5	K	644	650	parallel
Strand 6	K	445	450	parallel
Strand 7	K	748	750	anti-parallel
Strand 8	K	744	745	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KCB

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KCB