Analysis of interatomic Contacts of Structural Units in PDB entry:
8KCC

Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
This page provides analyses of contacts formed by:

chains
helices
sheets
residues

For analysis of ligand-protein contacts, use:

LPC software

3D structure can be seen in additional window with STING software for 8KCC entry

There are 11 chains in PDB entry 8KCC (CSU analysis of residue contacts immediately below table)

Chain ID	Initial residue	Terminal residue
A	VAL 24	LEU 125
B	VAL 24	LYS 127
C	SER 50	SER 144
D	SER 50	SER 144
E	PRO 38	ALA 135
F	PRO 38	ALA 135
G	ARG 23	GLY 102
H	GLY 13	GLY 102
I	A 1	T 150
J	A 1	T 150
K	GLU 183	SER 764

There are 57 helices in PDB entry 8KCC. Click on helix of interest for CSU analysis.

Helix number	Helix ID	Chain ID	Initial residue	Terminal residue	Helix class
Helix 1	AA1	A	25	31	Right-handed alpha
Helix 2	AA2	A	35	47	Right-handed alpha
Helix 3	AA3	A	54	82	Right-handed alpha
Helix 4	AA4	A	88	99	Right-handed alpha
Helix 5	AA5	A	99	106	Right-handed alpha
Helix 6	AA6	B	25	30	Right-handed alpha
Helix 7	AA7	B	35	47	Right-handed alpha
Helix 8	AA8	B	55	82	Right-handed alpha
Helix 9	AA9	B	88	99	Right-handed alpha
Helix 10	AB1	B	99	106	Right-handed alpha
Helix 11	AB2	C	57	69	Right-handed alpha
Helix 12	AB3	C	75	104	Right-handed alpha
Helix 13	AB4	C	110	122	Right-handed alpha
Helix 14	AB5	C	124	144	Right-handed alpha
Helix 15	AB6	D	57	69	Right-handed alpha
Helix 16	AB7	D	75	104	Right-handed alpha
Helix 17	AB8	D	110	122	Right-handed alpha
Helix 18	AB9	D	124	144	Right-handed alpha
Helix 19	AC1	E	42	58	Right-handed alpha
Helix 20	AC2	E	63	79	Right-handed alpha
Helix 21	AC3	E	85	114	Right-handed alpha
Helix 22	AC4	E	120	132	Right-handed alpha
Helix 23	AC5	F	42	58	Right-handed alpha
Helix 24	AC6	F	63	79	Right-handed alpha
Helix 25	AC7	F	85	114	Right-handed alpha
Helix 26	AC8	F	120	132	Right-handed alpha
Helix 27	AC9	G	25	29	Right-handed 310
Helix 28	AD1	G	30	42	Right-handed alpha
Helix 29	AD2	G	49	76	Right-handed alpha
Helix 30	AD3	G	82	93	Right-handed alpha
Helix 31	AD4	H	30	42	Right-handed alpha
Helix 32	AD5	H	48	76	Right-handed alpha
Helix 33	AD6	H	82	93	Right-handed alpha
Helix 34	AD7	K	184	194	Right-handed alpha
Helix 35	AD8	K	203	220	Right-handed alpha
Helix 36	AD9	K	232	247	Right-handed alpha
Helix 37	AE1	K	258	272	Right-handed alpha
Helix 38	AE2	K	284	296	Right-handed alpha
Helix 39	AE3	K	310	318	Right-handed alpha
Helix 40	AE4	K	335	339	Right-handed 310
Helix 41	AE5	K	343	352	Right-handed alpha
Helix 42	AE6	K	370	380	Right-handed alpha
Helix 43	AE7	K	386	394	Right-handed alpha
Helix 44	AE8	K	411	424	Right-handed alpha
Helix 45	AE9	K	453	465	Right-handed alpha
Helix 46	AF1	K	467	472	Right-handed alpha
Helix 47	AF2	K	489	498	Right-handed alpha
Helix 48	AF3	K	499	509	Right-handed alpha
Helix 49	AF4	K	515	523	Right-handed alpha
Helix 50	AF5	K	525	540	Right-handed alpha
Helix 51	AF6	K	549	564	Right-handed alpha
Helix 52	AF7	K	575	587	Right-handed alpha
Helix 53	AF8	K	623	632	Right-handed alpha
Helix 54	AF9	K	654	671	Right-handed alpha
Helix 55	AG1	K	706	711	Right-handed alpha
Helix 56	AG2	K	714	723	Right-handed alpha
Helix 57	AG3	K	759	764	Right-handed alpha

There are 14 sheets in PDB entry 8KCC. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6, AA7, AA8, AA9, AB1, AB2, AB3, AB4, AB5,

There are 2 strands in AA1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	51	52	first strand
Strand 2	D	108	109	parallel

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There are 2 strands in AA2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	86	87	first strand
Strand 2	D	73	74	parallel

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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	A	109	110	first strand
Strand 2	H	96	97	parallel

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There are 2 strands in AA4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	51	52	first strand
Strand 2	C	108	109	parallel

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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	86	87	first strand
Strand 2	C	73	74	parallel

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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	B	110	111	first strand
Strand 2	G	97	98	parallel

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There are 2 strands in AA7 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	83	84	first strand
Strand 2	G	80	81	parallel

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There are 2 strands in AA8 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	E	118	119	first strand
Strand 2	G	45	46	parallel

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There are 2 strands in AA9 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	83	84	first strand
Strand 2	H	80	81	parallel

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There are 2 strands in AB1 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	F	118	119	first strand
Strand 2	H	45	46	parallel

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There are 2 strands in AB2 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	224	225	first strand
Strand 2	K	428	429	parallel

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There are 5 strands in AB3 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	278	281	first strand
Strand 2	K	306	309	parallel
Strand 3	K	253	256	parallel
Strand 4	K	327	333	parallel
Strand 5	K	354	356	parallel

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There are 5 strands in AB4 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	278	281	first strand
Strand 2	K	306	309	parallel
Strand 3	K	253	256	parallel
Strand 4	K	327	333	parallel
Strand 5	K	359	360	parallel

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There are 8 strands in AB5 sheet. Click on strand of interest for CSU analysis.

Strand number	Chain ID	Initial residue	Terminal residue	Strand sense
Strand 1	K	567	570	first strand
Strand 2	K	595	599	parallel
Strand 3	K	543	547	parallel
Strand 4	K	614	617	parallel
Strand 5	K	643	651	parallel
Strand 6	K	443	451	parallel
Strand 7	K	748	750	anti-parallel
Strand 8	K	744	745	anti-parallel

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Please mail questions/suggestions concerning this page to Vladimir.Sobolev@weizmann. ac.il

Analysis of interatomic Contacts of Structural Units in PDB entry: 8KCC

Analysis of interatomic Contacts of Structural Units in PDB entry:
8KCC