Analysis of interatomic Contacts of Structural Units in PDB entry:
8KCI


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KCI entry

There is 1 chain in PDB entry 8KCI (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 THR 94GLU 1430
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 47 helices in PDB entry 8KCI. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
99 103Right-handed 310
Helix 2
AA2
A
115 125Right-handed alpha
Helix 3
AA3
A
129 133Right-handed 310
Helix 4
AA4
A
144 160Right-handed alpha
Helix 5
AA5
A
176 210Right-handed alpha
Helix 6
AA6
A
217 247Right-handed alpha
Helix 7
AA7
A
248 263Right-handed alpha
Helix 8
AA8
A
273 293Right-handed alpha
Helix 9
AA9
A
296 299Right-handed 310
Helix 10
AB1
A
300 315Right-handed alpha
Helix 11
AB2
A
320 328Right-handed alpha
Helix 12
AB3
A
329 363Right-handed alpha
Helix 13
AB4
A
375 401Right-handed alpha
Helix 14
AB5
A
408 422Right-handed alpha
Helix 15
AB6
A
432 448Right-handed alpha
Helix 16
AB7
A
449 471Right-handed alpha
Helix 17
AB8
A
602 610Right-handed alpha
Helix 18
AB9
A
638 645Right-handed alpha
Helix 19
AC1
A
651 661Right-handed alpha
Helix 20
AC2
A
663 669Right-handed alpha
Helix 21
AC3
A
686 702Right-handed alpha
Helix 22
AC4
A
717 727Right-handed alpha
Helix 23
AC5
A
768 770Right-handed 310
Helix 24
AC6
A
777 783Right-handed alpha
Helix 25
AC7
A
843 851Right-handed alpha
Helix 26
AC8
A
854 885Right-handed alpha
Helix 27
AC9
A
910 957Right-handed alpha
Helix 28
AD1
A
959 966Right-handed alpha
Helix 29
AD2
A
968 973Right-handed alpha
Helix 30
AD3
A
974 976Right-handed 310
Helix 31
AD4
A
977 983Right-handed alpha
Helix 32
AD5
A
985 1010Right-handed alpha
Helix 33
AD6
A
1017 1046Right-handed alpha
Helix 34
AD7
A
1047 1057Right-handed alpha
Helix 35
AD8
A
1060 1068Right-handed alpha
Helix 36
AD9
A
1069 1086Right-handed alpha
Helix 37
AE1
A
1088 1120Right-handed alpha
Helix 38
AE2
A
1131 1157Right-handed alpha
Helix 39
AE3
A
1158 1165Right-handed alpha
Helix 40
AE4
A
1262 1268Right-handed alpha
Helix 41
AE5
A
1283 1289Right-handed alpha
Helix 42
AE6
A
1296 1306Right-handed alpha
Helix 43
AE7
A
1309 1314Right-handed alpha
Helix 44
AE8
A
1331 1347Right-handed alpha
Helix 45
AE9
A
1362 1376Right-handed alpha
Helix 46
AF1
A
1410 1416Right-handed alpha
Helix 47
AF2
A
1420 1429Right-handed alpha
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There are 6 sheets in PDB entry 8KCI. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 3 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
584 586first strand
Strand 2
A
488 493anti-parallel
Strand 3
A
618 621anti-parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
625 627first strand
Strand 2
A
705 708parallel
Strand 3
A
736 739parallel
Strand 4
A
590 592parallel
Strand 5
A
752 757parallel
Strand 6
A
760 766anti-parallel
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There are 2 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1193 1194first strand
Strand 2
A
1216 1217anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1381 1384first strand
Strand 2
A
1222 1225parallel
Strand 3
A
1396 1398parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1252 1253first strand
Strand 2
A
1256 1257anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
1270 1273first strand
Strand 2
A
1350 1353parallel
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