Analysis of interatomic Contacts of Structural Units in PDB entry:
8KCM


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KCM entry

There are 6 chains in PDB entry 8KCM (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 PRO -2SER 462
B
 HIS 2SER 462
C
 C 3 A 14
D
 T 1 T 14
E
 G 4 A 14
F
 T 1 A 13
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 50 helices in PDB entry 8KCM. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
4 6Right-handed 310
Helix 2
AA2
A
34 47Right-handed alpha
Helix 3
AA3
A
58 64Right-handed 310
Helix 4
AA4
A
65 86Right-handed alpha
Helix 5
AA5
A
96 108Right-handed alpha
Helix 6
AA6
A
120 133Right-handed alpha
Helix 7
AA7
A
148 153Right-handed alpha
Helix 8
AA8
A
159 170Right-handed alpha
Helix 9
AA9
A
170 175Right-handed alpha
Helix 10
AB1
A
201 212Right-handed alpha
Helix 11
AB2
A
226 230Right-handed 310
Helix 12
AB3
A
233 248Right-handed alpha
Helix 13
AB4
A
248 256Right-handed alpha
Helix 14
AB5
A
267 273Right-handed alpha
Helix 15
AB6
A
277 288Right-handed alpha
Helix 16
AB7
A
291 316Right-handed alpha
Helix 17
AB8
A
321 325Right-handed 310
Helix 18
AB9
A
326 336Right-handed alpha
Helix 19
AC1
A
346 352Right-handed alpha
Helix 20
AC2
A
357 371Right-handed alpha
Helix 21
AC3
A
374 388Right-handed alpha
Helix 22
AC4
A
391 407Right-handed alpha
Helix 23
AC5
A
412 425Right-handed alpha
Helix 24
AC6
A
444 450Right-handed alpha
Helix 25
AC7
A
453 461Right-handed alpha
Helix 26
AC8
B
4 6Right-handed 310
Helix 27
AC9
B
34 48Right-handed alpha
Helix 28
AD1
B
61 64Right-handed 310
Helix 29
AD2
B
65 86Right-handed alpha
Helix 30
AD3
B
96 108Right-handed alpha
Helix 31
AD4
B
120 133Right-handed alpha
Helix 32
AD5
B
148 153Right-handed alpha
Helix 33
AD6
B
159 170Right-handed alpha
Helix 34
AD7
B
170 175Right-handed alpha
Helix 35
AD8
B
226 230Right-handed 310
Helix 36
AD9
B
233 248Right-handed alpha
Helix 37
AE1
B
248 256Right-handed alpha
Helix 38
AE2
B
267 273Right-handed alpha
Helix 39
AE3
B
277 288Right-handed alpha
Helix 40
AE4
B
291 303Right-handed alpha
Helix 41
AE5
B
303 316Right-handed alpha
Helix 42
AE6
B
321 325Right-handed 310
Helix 43
AE7
B
326 336Right-handed alpha
Helix 44
AE8
B
346 352Right-handed alpha
Helix 45
AE9
B
357 371Right-handed alpha
Helix 46
AF1
B
374 388Right-handed alpha
Helix 47
AF2
B
391 407Right-handed alpha
Helix 48
AF3
B
412 425Right-handed alpha
Helix 49
AF4
B
444 452Right-handed alpha
Helix 50
AF5
B
453 461Right-handed alpha
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There are 2 sheets in PDB entry 8KCM. Click on sheet of interest to get list of strands forming it: AA1, AA2,

There are 6 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
8 12first strand
Strand 2
A
138 141anti-parallel
Strand 3
A
112 116parallel
Strand 4
A
21 24parallel
Strand 5
A
51 57parallel
Strand 6
A
90 94parallel
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There are 6 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
8 12first strand
Strand 2
B
138 141anti-parallel
Strand 3
B
112 116parallel
Strand 4
B
21 24parallel
Strand 5
B
51 57parallel
Strand 6
B
90 94parallel
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