Analysis of interatomic Contacts of Structural Units in PDB entry:
8KCP


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KCP entry

There are 4 chains in PDB entry 8KCP (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 34ALA 700
B
 LYS 76ILE 467
C
 GLY 2LEU 244
D
 VAL 6PRO 101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 51 helices in PDB entry 8KCP. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 40Right-handed 310
Helix 2
AA2
A
79 87Right-handed alpha
Helix 3
AA3
A
104 113Right-handed alpha
Helix 4
AA4
A
153 157Right-handed 310
Helix 5
AA5
A
170 174Right-handed 310
Helix 6
AA6
A
185 200Right-handed alpha
Helix 7
AA7
A
226 241Right-handed alpha
Helix 8
AA8
A
298 314Right-handed alpha
Helix 9
AA9
A
337 349Right-handed alpha
Helix 10
AB1
A
355 357Right-handed 310
Helix 11
AB2
A
383 386Right-handed 310
Helix 12
AB3
A
387 406Right-handed alpha
Helix 13
AB4
A
426 431Right-handed alpha
Helix 14
AB5
A
472 478Right-handed alpha
Helix 15
AB6
A
481 502Right-handed alpha
Helix 16
AB7
A
514 527Right-handed alpha
Helix 17
AB8
A
539 546Right-handed 310
Helix 18
AB9
A
561 576Right-handed alpha
Helix 19
AC1
A
582 588Right-handed alpha
Helix 20
AC2
A
589 592Right-handed 310
Helix 21
AC3
A
632 637Right-handed alpha
Helix 22
AC4
A
665 693Right-handed alpha
Helix 23
AC5
A
693 698Right-handed alpha
Helix 24
AC6
B
77 103Right-handed alpha
Helix 25
AC7
B
124 156Right-handed alpha
Helix 26
AC8
B
158 176Right-handed alpha
Helix 27
AC9
B
176 190Right-handed alpha
Helix 28
AD1
B
195 215Right-handed alpha
Helix 29
AD2
B
218 240Right-handed alpha
Helix 30
AD3
B
242 263Right-handed alpha
Helix 31
AD4
B
266 278Right-handed alpha
Helix 32
AD5
B
383 399Right-handed alpha
Helix 33
AD6
B
402 429Right-handed alpha
Helix 34
AD7
B
437 450Right-handed alpha
Helix 35
AD8
B
453 463Right-handed alpha
Helix 36
AD9
C
3 14Right-handed alpha
Helix 37
AE1
C
14 25Right-handed alpha
Helix 38
AE2
C
28 61Right-handed alpha
Helix 39
AE3
C
64 103Right-handed alpha
Helix 40
AE4
C
113 140Right-handed alpha
Helix 41
AE5
C
155 184Right-handed alpha
Helix 42
AE6
C
186 203Right-handed alpha
Helix 43
AE7
C
204 206Right-handed 310
Helix 44
AE8
C
209 213Right-handed 310
Helix 45
AE9
C
214 232Right-handed alpha
Helix 46
AF1
C
235 241Right-handed alpha
Helix 47
AF2
D
7 22Right-handed alpha
Helix 48
AF3
D
26 37Right-handed alpha
Helix 49
AF4
D
38 43Right-handed alpha
Helix 50
AF5
D
49 81Right-handed alpha
Helix 51
AF6
D
87 92Right-handed alpha
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There are 6 sheets in PDB entry 8KCP. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
657 663anti-parallel
Strand 3
A
212 218anti-parallel
Strand 4
A
69 76anti-parallel
Strand 5
A
94 99parallel
Strand 6
A
118 124parallel
Strand 7
A
180 183parallel
Strand 8
A
47 49anti-parallel
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There are 4 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
53 54anti-parallel
Strand 3
A
649 651anti-parallel
Strand 4
A
248 250anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
375 379parallel
Strand 3
A
437 442anti-parallel
Strand 4
A
359 365parallel
Strand 5
A
275 281parallel
Strand 6
A
324 330parallel
Strand 7
A
253 259anti-parallel
Strand 8
A
626 630anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
577 579first strand
Strand 2
A
619 622anti-parallel
Strand 3
A
604 605anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
D
93 95anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 289first strand
Strand 2
B
380 382anti-parallel
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