Analysis of interatomic Contacts of Structural Units in PDB entry:
8KCS


Contacts of Structural Units (CSU) are derived with the CSU software (Sobolev V., Sorokine A., Prilusky J., Abola E.E. and Edelman M. (1999) Automated analysis of interatomic contacts in proteins. Bioinformatics, 15, 327-332).
For CSU analysis of other PDB entry

This page provides analyses of contacts formed by:
For analysis of ligand-protein contacts, use: 3D structure can be seen in additional window with STING software for 8KCS entry

There are 4 chains in PDB entry 8KCS (CSU analysis of residue contacts immediately below table)
Chain ID Initial residueTerminal residue
A
 ASN 34ALA 700
B
 LYS 76ILE 467
C
 GLY 2LEU 244
D
 VAL 6PRO 101
Residue contacts

1. List of contacts for up to 10 consecutive residues:
Chain ID from residue number to residue number


2. Detailed analyses of contacts for any single residue:
Residue number chain ID
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There are 54 helices in PDB entry 8KCS. Click on helix of interest for CSU analysis.
Helix
number 		Helix
ID		Chain
ID		 Initial
residue		Terminal
residue		 Helix class
Helix 1
AA1
A
36 40Right-handed 310
Helix 2
AA2
A
80 87Right-handed alpha
Helix 3
AA3
A
101 103Right-handed 310
Helix 4
AA4
A
104 114Right-handed alpha
Helix 5
AA5
A
142 146Right-handed 310
Helix 6
AA6
A
153 157Right-handed 310
Helix 7
AA7
A
170 174Right-handed 310
Helix 8
AA8
A
185 200Right-handed alpha
Helix 9
AA9
A
202 206Right-handed 310
Helix 10
AB1
A
226 241Right-handed alpha
Helix 11
AB2
A
298 313Right-handed alpha
Helix 12
AB3
A
337 349Right-handed alpha
Helix 13
AB4
A
383 386Right-handed 310
Helix 14
AB5
A
387 406Right-handed alpha
Helix 15
AB6
A
426 435Right-handed alpha
Helix 16
AB7
A
459 464Right-handed 310
Helix 17
AB8
A
472 479Right-handed alpha
Helix 18
AB9
A
481 502Right-handed alpha
Helix 19
AC1
A
514 527Right-handed alpha
Helix 20
AC2
A
531 536Right-handed alpha
Helix 21
AC3
A
537 538Right-handed 310
Helix 22
AC4
A
539 546Right-handed 310
Helix 23
AC5
A
561 576Right-handed alpha
Helix 24
AC6
A
582 588Right-handed alpha
Helix 25
AC7
A
632 637Right-handed alpha
Helix 26
AC8
A
665 693Right-handed alpha
Helix 27
AC9
A
693 698Right-handed alpha
Helix 28
AD1
B
82 103Right-handed alpha
Helix 29
AD2
B
124 156Right-handed alpha
Helix 30
AD3
B
158 176Right-handed alpha
Helix 31
AD4
B
176 189Right-handed alpha
Helix 32
AD5
B
195 215Right-handed alpha
Helix 33
AD6
B
218 241Right-handed alpha
Helix 34
AD7
B
242 263Right-handed alpha
Helix 35
AD8
B
266 278Right-handed alpha
Helix 36
AD9
B
383 399Right-handed alpha
Helix 37
AE1
B
402 429Right-handed alpha
Helix 38
AE2
B
434 452Right-handed alpha
Helix 39
AE3
B
453 464Right-handed alpha
Helix 40
AE4
C
3 14Right-handed alpha
Helix 41
AE5
C
14 25Right-handed alpha
Helix 42
AE6
C
28 60Right-handed alpha
Helix 43
AE7
C
65 103Right-handed alpha
Helix 44
AE8
C
113 141Right-handed alpha
Helix 45
AE9
C
155 185Right-handed alpha
Helix 46
AF1
C
186 204Right-handed alpha
Helix 47
AF2
C
205 207Right-handed 310
Helix 48
AF3
C
214 232Right-handed alpha
Helix 49
AF4
C
235 241Right-handed alpha
Helix 50
AF5
D
7 22Right-handed alpha
Helix 51
AF6
D
26 37Right-handed alpha
Helix 52
AF7
D
38 43Right-handed alpha
Helix 53
AF8
D
49 82Right-handed alpha
Helix 54
AF9
D
86 92Right-handed alpha
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There are 6 sheets in PDB entry 8KCS. Click on sheet of interest to get list of strands forming it: AA1, AA2, AA3, AA4, AA5, AA6,

There are 8 strands in AA1 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
42 44first strand
Strand 2
A
657 663anti-parallel
Strand 3
A
212 218anti-parallel
Strand 4
A
69 75anti-parallel
Strand 5
A
94 99parallel
Strand 6
A
118 124parallel
Strand 7
A
180 183parallel
Strand 8
A
47 49anti-parallel
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There are 3 strands in AA2 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
59 60first strand
Strand 2
A
53 54anti-parallel
Strand 3
A
649 650anti-parallel
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There are 8 strands in AA3 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
412 414first strand
Strand 2
A
375 379parallel
Strand 3
A
438 442anti-parallel
Strand 4
A
359 365parallel
Strand 5
A
275 281parallel
Strand 6
A
324 330parallel
Strand 7
A
253 259anti-parallel
Strand 8
A
626 630anti-parallel
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There are 3 strands in AA4 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
A
577 579first strand
Strand 2
A
619 623anti-parallel
Strand 3
A
601 605anti-parallel
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There are 2 strands in AA5 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
193 194first strand
Strand 2
D
93 95anti-parallel
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There are 2 strands in AA6 sheet. Click on strand of interest for CSU analysis.
Strand
number 		Chain
ID		 Initial
residue		Terminal
residue		 Strand sense
Strand 1
B
287 289first strand
Strand 2
B
380 382anti-parallel
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